src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.16

Index: src/hg/makeDb/trackDb/trackDb.chainNet.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.chainNet.ra,v
retrieving revision 1.15
retrieving revision 1.16
diff -b -B -U 4 -r1.15 -r1.16
--- src/hg/makeDb/trackDb/trackDb.chainNet.ra	23 Dec 2009 17:59:15 -0000	1.15
+++ src/hg/makeDb/trackDb/trackDb.chainNet.ra	23 Dec 2009 19:06:33 -0000	1.16
@@ -1385,8 +1385,48 @@
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment net
     type netAlign rheMac2 chainRheMac2
 
+track chainNetRheMac1
+release alpha
+compositeTrack on
+shortLabel Rhesus Chain/Net
+longLabel Rhesus (Jan. 2005/rheMac1), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
+group compGeno
+noInherit on
+priority 498
+color 100,50,0
+altColor 255,240,200
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
+matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+matrixHeader A, C, G, T
+otherDb rheMac1
+chainMinScore 3000
+chainLinearGap medium
+html chainNet
+
+    track chainRheMac1
+    release alpha
+    subTrack chainNetRheMac1
+    subGroups view=chain
+    shortLabel $o_Organism Chain
+    longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+    type chain rheMac1
+
+    track netRheMac1
+    release alpha
+    subTrack chainNetRheMac1
+    subGroups view=net
+    shortLabel $o_Organism Net
+    longLabel $o_Organism ($o_date/$o_db) Alignment net
+    type netAlign rheMac1 chainRheMac1
+
 track chainNetPoodle
 compositeTrack on
 shortLabel Poodle Chain/Net
 longLabel Poodle Chain and Net Alignments