src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.28
1.28 2009/12/30 18:49:34 hiram
do not need individual chain net entries for hgwdev specific genomes sorAra1 eriEur1 tupBel1 otoGar1 oryCun1 gorGor1
Index: src/hg/makeDb/trackDb/trackDb.chainNet.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.chainNet.ra,v
retrieving revision 1.27
retrieving revision 1.28
diff -b -B -U 4 -r1.27 -r1.28
--- src/hg/makeDb/trackDb/trackDb.chainNet.ra 29 Dec 2009 23:27:33 -0000 1.27
+++ src/hg/makeDb/trackDb/trackDb.chainNet.ra 30 Dec 2009 18:49:34 -0000 1.28
@@ -1112,9 +1112,8 @@
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign monDom5 chainMonDom5
track chainNetEriEur1
-release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
@@ -1151,9 +1150,8 @@
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign eriEur1 chainEriEur1
track chainNetSorAra1
-release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
@@ -1176,17 +1174,15 @@
spectrum on
html chainNet
track chainSorAra1
- release alpha
subTrack chainNetSorAra1
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain sorAra1
track netSorAra1
- release alpha
subTrack chainNetSorAra1
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
@@ -1528,9 +1524,8 @@
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign cavPor2 chainCavPor2
track chainNetOryCun2
-release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
@@ -1553,25 +1548,22 @@
spectrum on
html chainNet
track chainOryCun2
- release alpha
subTrack chainNetOryCun2
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain oryCun2
track netOryCun2
- release alpha
subTrack chainNetOryCun2
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign oryCun2 chainOryCun2
track chainNetOryCun1
-release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
@@ -1594,17 +1586,15 @@
spectrum on
html chainNet
track chainOryCun1
- release alpha
subTrack chainNetOryCun1
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain oryCun1
track netOryCun1
- release alpha
subTrack chainNetOryCun1
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
@@ -2133,9 +2123,8 @@
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign panTro1 chainPanTro1
track chainNetGorGor1
-release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
@@ -2157,17 +2146,15 @@
chainLinearGap medium
html chainNet
track chainGorGor1
- release alpha
subTrack chainNetGorGor1
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain gorGor1
track netGorGor1
- release alpha
subTrack chainNetGorGor1
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
@@ -2213,9 +2200,8 @@
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign ponAbe2 chainPonAbe2
track chainNetTupBel1
-release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
@@ -2237,25 +2223,22 @@
chainLinearGap medium
html chainNet
track chainTupBel1
- release alpha
subTrack chainNetTupBel1
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain tupBel1
track netTupBel1
- release alpha
subTrack chainNetTupBel1
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign tupBel1 chainTupBel1
track chainNetOtoGar1
-release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
@@ -2277,17 +2260,15 @@
chainLinearGap medium
html chainNet
track chainOtoGar1
- release alpha
subTrack chainNetOtoGar1
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain otoGar1
track netOtoGar1
- release alpha
subTrack chainNetOtoGar1
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net