src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.31

Index: src/hg/makeDb/trackDb/trackDb.chainNet.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.chainNet.ra,v
retrieving revision 1.30
retrieving revision 1.31
diff -b -B -U 4 -r1.30 -r1.31
--- src/hg/makeDb/trackDb/trackDb.chainNet.ra	4 Jan 2010 19:12:31 -0000	1.30
+++ src/hg/makeDb/trackDb/trackDb.chainNet.ra	4 Jan 2010 19:59:30 -0000	1.31
@@ -1151,8 +1151,46 @@
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign braFlo1 chainBraFlo1
 
+track chainNetMacEug1
+compositeTrack on
+shortLabel $o_db Chain/Net
+longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
+group compGeno
+noInherit on
+priority 191
+color 100,50,0
+altColor 255,240,200
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
+matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+matrixHeader A, C, G, T
+otherDb macEug1
+chainMinScore 3000
+chainLinearGap medium
+spectrum on
+html chainNet
+
+    track chainMacEug1
+    subTrack chainNetMacEug1
+    subGroups view=chain
+    shortLabel $o_Organism Chain
+    longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+    type chain macEug1
+
+    track netMacEug1
+    subTrack chainNetMacEug1
+    subGroups view=net
+    shortLabel $o_Organism Net
+    longLabel $o_Organism ($o_date/$o_db) Alignment Net
+    type netAlign macEug1 chainMacEug1
+
 track chainNetLoxAfr3
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
@@ -1761,8 +1799,46 @@
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign mm6 chainMm6
 
+track chainNetMm5
+compositeTrack on
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
+group compGeno
+noInherit on
+priority 209
+color 0,0,0
+altColor 255,255,0
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
+matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+matrixHeader A, C, G, T
+otherDb mm5
+chainMinScore 3000
+chainLinearGap medium
+spectrum on
+html chainNet
+
+    track chainMm5
+    subTrack chainNetMm5
+    subGroups view=chain
+    shortLabel $o_Organism Chain
+    longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+    type chain mm5
+
+    track netMm5
+    subTrack chainNetMm5
+    subGroups view=net
+    shortLabel $o_Organism Net
+    longLabel $o_Organism ($o_date/$o_db) Alignment Net
+    type netAlign mm5 chainMm5
+
 # release alpha until rn4 individual chain/net tracks phased out
 track chainNetRn4
 release alpha
 compositeTrack on