src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.9

Index: src/hg/makeDb/trackDb/trackDb.chainNet.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.chainNet.ra,v
retrieving revision 1.8
retrieving revision 1.9
diff -b -B -U 4 -r1.8 -r1.9
--- src/hg/makeDb/trackDb/trackDb.chainNet.ra	18 Dec 2009 20:19:46 -0000	1.8
+++ src/hg/makeDb/trackDb/trackDb.chainNet.ra	18 Dec 2009 23:41:19 -0000	1.9
@@ -202,8 +202,50 @@
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign gasAcu1 chainGasAcu1
 
+# release alpha until individual galGal2 tracks are obsolete
+track chainNetGalGal2
+release alpha
+compositeTrack on
+shortLabel Chicken Chain/Net
+longLabel Chicken (Feb 2004/galGal2), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
+group compGeno
+noInherit on
+priority 181
+color 0,0,0
+altColor 255,255,0
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
+matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
+matrixHeader A, C, G, T
+otherDb galGal2
+chainMinScore 5000
+chainLinearGap loose
+spectrum on
+html chainNet
+
+    track chainGalGal2
+    release alpha
+    subTrack chainNetGalGal2
+    subGroups view=chain
+    shortLabel $o_Organism Chain
+    longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+    type chain galGal2
+
+    track netGalGal2
+    release alpha
+    subTrack chainNetGalGal2
+    subGroups view=net
+    shortLabel $o_Organism Net
+    longLabel $o_Organism ($o_date/$o_db) Alignment Net
+    type netAlign galGal2 chainGalGal2
+
 # release alpha until individual galGal3 tracks are obsolete
 track chainNetGalGal3
 release alpha
 compositeTrack on