src/hg/makeDb/trackDb/trackDb.ra 1.575
1.575 2009/12/30 18:49:34 hiram
do not need individual chain net entries for hgwdev specific genomes sorAra1 eriEur1 tupBel1 otoGar1 oryCun1 gorGor1
Index: src/hg/makeDb/trackDb/trackDb.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.ra,v
retrieving revision 1.574
retrieving revision 1.575
diff -b -B -U 4 -r1.574 -r1.575
--- src/hg/makeDb/trackDb/trackDb.ra 29 Dec 2009 23:27:33 -0000 1.574
+++ src/hg/makeDb/trackDb/trackDb.ra 30 Dec 2009 18:49:34 -0000 1.575
@@ -2839,60 +2839,8 @@
spectrum on
type netAlign mm7 chainMm7
otherDb mm7
-track chainSorAra1
-release beta
-shortLabel $o_Organism Chain
-longLabel $o_Organism ($o_date/$o_db) Chained Alignments
-group compGeno
-priority 256.26
-visibility hide
-color 100,50,0
-altColor 255,240,200
-spectrum on
-matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
-matrixHeader A, C, G, T
-type chain sorAra1
-otherDb sorAra1
-
-track netSorAra1
-release beta
-shortLabel $o_Organism Net
-longLabel $o_Organism ($o_date/$o_db) Alignment Net
-group compGeno
-priority 256.27
-visibility hide
-spectrum on
-type netAlign sorAra1 chainSorAra1
-otherDb sorAra1
-
-track chainEriEur1
-release beta
-shortLabel $o_Organism Chain
-longLabel $o_Organism ($o_date/$o_db) Chained Alignments
-group compGeno
-priority 256.28
-visibility hide
-color 100,50,0
-altColor 255,240,200
-spectrum on
-matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
-matrixHeader A, C, G, T
-type chain eriEur1
-otherDb eriEur1
-
-track netEriEur1
-release beta
-shortLabel $o_Organism Net
-longLabel $o_Organism ($o_date/$o_db) Alignment Net
-group compGeno
-priority 256.29
-visibility hide
-spectrum on
-type netAlign eriEur1 chainEriEur1
-otherDb eriEur1
-
# release beta until composite chainNetBosTau4 track becomes the default
track chainBosTau4
release beta
shortLabel $o_Organism Chain
@@ -3031,45 +2979,8 @@
matrixHeader A, C, G, T
type chain felCat3
otherDb felCat3
-track chainTupBel1
-release beta
-shortLabel $o_Organism Chain
-longLabel $o_Organism ($o_date/$o_db) Chained Alignments
-group compGeno
-priority 272
-visibility hide
-color 100,50,0
-altColor 255,240,200
-spectrum on
-type chain tupBel1
-otherDb tupBel1
-
-track netTupBel1
-release beta
-shortLabel $o_Organism Net
-longLabel $o_Organism ($o_date/$o_db) Alignment Net
-group compGeno
-priority 272.2
-visibility hide
-spectrum on
-type netAlign tupBel1 chainTupBel1
-otherDb tupBel1
-
-track chainOtoGar1
-release beta
-shortLabel $o_Organism Chain
-longLabel $o_Organism ($o_date/$o_db) Chained Alignments
-group compGeno
-priority 274
-visibility hide
-color 100,50,0
-altColor 255,240,200
-spectrum on
-type chain otoGar1
-otherDb otoGar1
-
track chainOtoGar1Best
shortLabel $o_Organism Best Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments Recip Best
group compGeno
@@ -3080,19 +2991,8 @@
spectrum on
type chain otoGar1
otherDb otoGar1
-track netOtoGar1
-release beta
-shortLabel $o_Organism Net
-longLabel $o_Organism ($o_date/$o_db) Alignment Net
-group compGeno
-priority 274.2
-visibility hide
-spectrum on
-type netAlign otoGar1 chainOtoGar1
-otherDb otoGar1
-
track chainCanHg12
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
group compGeno
@@ -3212,34 +3112,8 @@
spectrum on
type netAlign cavPor2 chainCavPor2
otherDb cavPor2
-track chainOryCun1
-release beta
-shortLabel $o_Organism Chain
-longLabel $o_Organism ($o_date/$o_db) Chained Alignments
-group compGeno
-priority 197
-visibility hide
-color 100,50,0
-altColor 255,240,200
-matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
-matrixHeader A, C, G, T
-spectrum on
-type chain oryCun1
-otherDb oryCun1
-
-track netOryCun1
-release beta
-shortLabel $o_Organism Net
-longLabel $o_Organism ($o_date/$o_db) Alignment Net
-group compGeno
-priority 197.1
-visibility hide
-spectrum on
-type netAlign oryCun1 chainoryCun1
-otherDb oryCun1
-
# release beta until composite chainNetPanTro1 track becomes the default
track chainPanTro1
release beta
shortLabel $o_Organism Chain
@@ -3289,32 +3163,8 @@
spectrum on
type netAlign panTro2 chainPanTro2
otherDb panTro2
-track chainGorGor1
-release beta
-shortLabel $o_Organism Chain
-longLabel $o_Organism ($o_date/$o_db) Chained Alignments
-group compGeno
-priority 287
-visibility hide
-color 100,50,0
-altColor 255,240,200
-spectrum on
-type chain gorGor1
-otherDb gorGor1
-
-track netGorGor1
-release beta
-shortLabel $o_Organism Net
-longLabel $o_Organism ($o_date/$o_db) Alignment Net
-group compGeno
-priority 287.1
-visibility hide
-spectrum on
-type netAlign gorGor1 chainGorGor1
-otherDb gorGor1
-
track chainPonAbe2
release beta
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments