src/hg/makeDb/trackDb/transMapAlnUcscGenes.html 1.8
1.8 2009/12/17 18:43:38 ann
removed references to specific assemblies
Index: src/hg/makeDb/trackDb/transMapAlnUcscGenes.html
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/transMapAlnUcscGenes.html,v
retrieving revision 1.7
retrieving revision 1.8
diff -b -B -U 4 -r1.7 -r1.8
--- src/hg/makeDb/trackDb/transMapAlnUcscGenes.html 9 Dec 2008 22:18:54 -0000 1.7
+++ src/hg/makeDb/trackDb/transMapAlnUcscGenes.html 17 Dec 2009 18:43:38 -0000 1.8
@@ -83,11 +83,11 @@
<tt>destUniq</tt> is added to give the subsequent TransMap alignments unique
identifiers.
</P>
<P>
-For example, in the cow (bosTau4) genome, there are two alignments of mRNA <tt>BC149621.1</tt>.
+For example, in the cow genome, there are two alignments of mRNA <tt>BC149621.1</tt>.
These are assigned the identifiers <tt>BC149621.1-1</tt> and <tt>BC149621.1-2</tt>.
-When these are mapped to the human (hg18) genome, <tt>BC149621.1-1</tt> maps to a single
+When these are mapped to the human genome, <tt>BC149621.1-1</tt> maps to a single
location and is given the identifier <tt>BC149621.1-1.1</tt>. However, <tt>BC149621.1-2</tt>
maps to two locations, resulting in <tt>BC149621.1-2.1</tt> and <tt>BC149621.1-2.2</tt>. Note
that multiple TransMap mappings are usually the result of tandem duplications, where both
chains are identified as syntenic.