src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.20
1.20 2009/12/28 21:41:51 hiram
all zebrafish chain and net tracks are now composites
Index: src/hg/makeDb/trackDb/trackDb.chainNet.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.chainNet.ra,v
retrieving revision 1.19
retrieving revision 1.20
diff -b -B -U 1000000 -r1.19 -r1.20
--- src/hg/makeDb/trackDb/trackDb.chainNet.ra 23 Dec 2009 23:19:22 -0000 1.19
+++ src/hg/makeDb/trackDb/trackDb.chainNet.ra 28 Dec 2009 21:41:51 -0000 1.20
@@ -1,1589 +1,1794 @@
# "$Id$";
# release alpha until individual fr2 tracks are obsolete
track chainNetFr2
release alpha
compositeTrack on
-shortLabel Fugu Chain/Net
-longLabel Fugu (Oct. 2004/fr2), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Oct. 2004/fr2), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb fr2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainFr2
release alpha
subTrack chainNetFr2
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain fr2
track netFr2
release alpha
subTrack chainNetFr2
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign fr2 chainFr2
# release alpha until individual fr1 tracks are obsolete
track chainNetFr1
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
-longLabel Fugu (Aug. 2002/fr1), Chain and Net Alignments
+longLabel $o_Organism (Aug. 2002/fr1), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb fr1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainFr1
release alpha
subTrack chainNetFr1
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain fr1
track netFr1
release alpha
subTrack chainNetFr1
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign fr1 chainFr1
track chainNetTetNig2
compositeTrack on
-shortLabel Tetraodon Chain/Net
-longLabel Tetraodon (Mar. 2007/tetNig2), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Mar. 2007/tetNig2), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb tetNig2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainTetNig2
subTrack chainNetTetNig2
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain tetNig2
track netTetNig2
subTrack chainNetTetNig2
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign tetNig2 chainTetNig2
track chainNetTetNig1
release alpha
compositeTrack on
-shortLabel Tetraodon Chain/Net
-longLabel Tetraodon (Feb. 2004/tetNig1), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Feb. 2004/tetNig1), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb tetNig1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainTetNig1
release alpha
subTrack chainNetTetNig1
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain tetNig1
track netTetNig1
release alpha
subTrack chainNetTetNig1
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign tetNig1 chainTetNig1
track chainNetDanRer6
compositeTrack on
-shortLabel Zebrafish Chain/Net
-longLabel Zebrafish (Dec. 2008/danRer6), Chain and Net Alignments
+shortLabel $o_db Chain/Net
+longLabel $o_Organism (Dec. 2008/danRer6), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer6
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainDanRer6
subTrack chainNetDanRer6
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain danRer6
track netDanRer6
subTrack chainNetDanRer6
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign danRer6 chainDanRer6
+track chainNetDanRer5
+release alpha
+compositeTrack on
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Dec. 2008/danRer5), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
+group compGeno
+noInherit on
+priority 159
+color 0,0,0
+altColor 255,255,0
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
+matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
+matrixHeader A, C, G, T
+otherDb danRer5
+chainMinScore 5000
+chainLinearGap loose
+spectrum on
+html chainNet
+
+ track chainDanRer5
+ release alpha
+ subTrack chainNetDanRer5
+ subGroups view=chain
+ shortLabel $o_Organism Chain
+ longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+ type chain danRer5
+
+ track netDanRer5
+ release alpha
+ subTrack chainNetDanRer5
+ subGroups view=net
+ shortLabel $o_Organism Net
+ longLabel $o_Organism ($o_date/$o_db) Alignment Net
+ type netAlign danRer5 chainDanRer5
+
+track chainNetDanRer4
+release alpha
+compositeTrack on
+shortLabel $o_db Chain/Net
+longLabel $o_Organism (Dec. 2008/danRer4), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
+group compGeno
+noInherit on
+priority 159
+color 0,0,0
+altColor 255,255,0
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
+matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
+matrixHeader A, C, G, T
+otherDb danRer4
+chainMinScore 5000
+chainLinearGap loose
+spectrum on
+html chainNet
+
+ track chainDanRer4
+ release alpha
+ subTrack chainNetDanRer4
+ subGroups view=chain
+ shortLabel $o_Organism Chain
+ longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+ type chain danRer4
+
+ track netDanRer4
+ release alpha
+ subTrack chainNetDanRer4
+ subGroups view=net
+ shortLabel $o_Organism Net
+ longLabel $o_Organism ($o_date/$o_db) Alignment Net
+ type netAlign danRer4 chainDanRer4
+
+track chainNetDanRer3
+release alpha
+compositeTrack on
+shortLabel $o_db Chain/Net
+longLabel $o_Organism (Dec. 2008/danRer3), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
+group compGeno
+noInherit on
+priority 159
+color 0,0,0
+altColor 255,255,0
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
+matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
+matrixHeader A, C, G, T
+otherDb danRer3
+chainMinScore 5000
+chainLinearGap loose
+spectrum on
+html chainNet
+
+ track chainDanRer3
+ release alpha
+ subTrack chainNetDanRer3
+ subGroups view=chain
+ shortLabel $o_Organism Chain
+ longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+ type chain danRer3
+
+ track netDanRer3
+ release alpha
+ subTrack chainNetDanRer3
+ subGroups view=net
+ shortLabel $o_Organism Net
+ longLabel $o_Organism ($o_date/$o_db) Alignment Net
+ type netAlign danRer3 chainDanRer3
+
+track chainNetDanRer2
+release alpha
+compositeTrack on
+shortLabel $o_db Chain/Net
+longLabel $o_Organism (Dec. 2008/danRer2), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
+group compGeno
+noInherit on
+priority 159
+color 0,0,0
+altColor 255,255,0
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
+matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
+matrixHeader A, C, G, T
+otherDb danRer2
+chainMinScore 5000
+chainLinearGap loose
+spectrum on
+html chainNet
+
+ track chainDanRer2
+ release alpha
+ subTrack chainNetDanRer2
+ subGroups view=chain
+ shortLabel $o_Organism Chain
+ longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+ type chain danRer2
+
+ track netDanRer2
+ release alpha
+ subTrack chainNetDanRer2
+ subGroups view=net
+ shortLabel $o_Organism Net
+ longLabel $o_Organism ($o_date/$o_db) Alignment Net
+ type netAlign danRer2 chainDanRer2
+
+track chainNetDanRer1
+release alpha
+compositeTrack on
+shortLabel $o_db Chain/Net
+longLabel $o_Organism (Dec. 2008/danRer1), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
+group compGeno
+noInherit on
+priority 159
+color 0,0,0
+altColor 255,255,0
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
+matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
+matrixHeader A, C, G, T
+otherDb danRer1
+chainMinScore 5000
+chainLinearGap loose
+spectrum on
+html chainNet
+
+ track chainDanRer1
+ release alpha
+ subTrack chainNetDanRer1
+ subGroups view=chain
+ shortLabel $o_Organism Chain
+ longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+ type chain danRer1
+
+ track netDanRer1
+ release alpha
+ subTrack chainNetDanRer1
+ subGroups view=net
+ shortLabel $o_Organism Net
+ longLabel $o_Organism ($o_date/$o_db) Alignment Net
+ type netAlign danRer1 chainDanRer1
+
track chainNetXenTro2
release alpha
compositeTrack on
-shortLabel Zebrafish Chain/Net
-longLabel Zebrafish (Aug. 2005/xenTro2), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Aug. 2005/xenTro2), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb xenTro2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainXenTro2
release alpha
subTrack chainNetXenTro2
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain xenTro2
track netXenTro2
release alpha
subTrack chainNetXenTro2
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign xenTro2 chainXenTro2
track chainNetXenTro1
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
-longLabel Zebrafish (Oct. 2004/xenTro1), Chain and Net Alignments
+longLabel $o_Organism (Oct. 2004/xenTro1), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb xenTro1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainXenTro1
release alpha
subTrack chainNetXenTro1
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain xenTro1
track netXenTro1
release alpha
subTrack chainNetXenTro1
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign xenTro1 chainXenTro1
# release alpha until individual oryLat2 tracks are obsolete
track chainNetOryLat2
release alpha
compositeTrack on
-shortLabel Medaka Chain/Net
-longLabel Medaka (Oct. 2005/oryLat2), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Oct. 2005/oryLat2), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 165.5
color 100,50,0
altColor 255,240,200
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb oryLat2
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainOryLat2
release alpha
subTrack chainNetOryLat2
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain oryLat2
otherDb oryLat2
track netOryLat2
release alpha
subTrack chainNetOryLat2
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign oryLat2 chainOryLat2
otherDb oryLat2
# release alpha since oryLat1 is obsolete
track chainNetOryLat1
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
-longLabel Medaka (Oct. 2005/oryLat1), Chain and Net Alignments
+longLabel $o_Organism (Oct. 2005/oryLat1), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 165.5
color 100,50,0
altColor 255,240,200
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb oryLat1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainOryLat1
release alpha
subTrack chainNetOryLat1
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain oryLat1
otherDb oryLat1
track netOryLat1
release alpha
subTrack chainNetOryLat1
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign oryLat1 chainOryLat1
otherDb oryLat1
# release alpha until individual gasAcu1 tracks are obsolete
track chainNetGasAcu1
release alpha
compositeTrack on
-shortLabel Stickleback Chain/Net
-longLabel Stickleback (Feb 2006/gasAcu1), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Feb 2006/gasAcu1), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb gasAcu1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainGasAcu1
release alpha
subTrack chainNetGasAcu1
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain gasAcu1
track netGasAcu1
release alpha
subTrack chainNetGasAcu1
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign gasAcu1 chainGasAcu1
# release alpha until individual galGal2 tracks are obsolete
track chainNetGalGal2
release alpha
compositeTrack on
-shortLabel Chicken Chain/Net
-longLabel Chicken (Feb 2004/galGal2), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Feb 2004/galGal2), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb galGal2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainGalGal2
release alpha
subTrack chainNetGalGal2
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain galGal2
track netGalGal2
release alpha
subTrack chainNetGalGal2
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign galGal2 chainGalGal2
# release alpha until individual galGal3 tracks are obsolete
track chainNetGalGal3
release alpha
compositeTrack on
-shortLabel Chicken Chain/Net
-longLabel Chicken (May 2006/galGal3), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (May 2006/galGal3), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb galGal3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainGalGal3
release alpha
subTrack chainNetGalGal3
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain galGal3
track netGalGal3
release alpha
subTrack chainNetGalGal3
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign galGal3 chainGalGal3
# release alpha until ornAna1 individual chain/net tracks phased out
track chainNetOrnAna1
release alpha
compositeTrack on
-shortLabel Platypus Chain/Net
-longLabel Platypus (Mar. 2007/ornAna1), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Mar. 2007/ornAna1), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 191
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb ornAna1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainOrnAna1
release alpha
subTrack chainNetOrnAna1
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain ornAna1
track netOrnAna1
release alpha
subTrack chainNetOrnAna1
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign ornAna1 chainOrnAna1
track chainNetMonDom1
release alpha
compositeTrack on
-shortLabel Opossum Chain/Net
-longLabel Opossum (Oct. 2004/monDom1), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Oct. 2004/monDom1), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 191
color 100,50,0
altColor 255,240,200
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb monDom1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainMonDom1
release alpha
subTrack chainNetMonDom1
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain monDom1
track netMonDom1
release alpha
subTrack chainNetMonDom1
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign monDom1 chainMonDom1
track chainNetMonDom4
release alpha
compositeTrack on
-shortLabel Opossum Chain/Net
-longLabel Opossum (Jan. 2006/monDom4), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Jan. 2006/monDom4), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 191
color 100,50,0
altColor 255,240,200
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb monDom4
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainMonDom4
release alpha
subTrack chainNetMonDom4
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain monDom4
track netMonDom4
release alpha
subTrack chainNetMonDom4
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign monDom4 chainMonDom4
track chainNetMonDom5
compositeTrack on
-shortLabel Opossum Chain/Net
-longLabel Opossum (Oct. 2006/monDom5), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Oct. 2006/monDom5), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 191
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb monDom5
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainMonDom5
subTrack chainNetMonDom5
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain monDom5
track netMonDom5
subTrack chainNetMonDom5
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign monDom5 chainMonDom5
# release alpha until mm9 individual chain/net tracks phased out
track chainNetMm9
release alpha
compositeTrack on
-shortLabel Mouse Chain/Net
-longLabel Mouse (Jul. 2007/mm9), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Jul. 2007/mm9), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb mm9
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainMm9
release alpha
subTrack chainNetMm9
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain mm9
track netMm9
release alpha
subTrack chainNetMm9
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign mm9 chainMm9
# release alpha until mm8 individual chain/net tracks phased out
track chainNetMm8
release alpha
compositeTrack on
-shortLabel Mouse Chain/Net
-longLabel Mouse (Feb. 2006/mm8), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Feb. 2006/mm8), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb mm8
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainMm8
release alpha
subTrack chainNetMm8
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain mm8
track netMm8
release alpha
subTrack chainNetMm8
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign mm8 chainMm8
# release alpha until mm7 individual chain/net tracks phased out
track chainNetMm7
release alpha
compositeTrack on
-shortLabel Mouse Chain/Net
-longLabel Mouse (Aug. 2005/mm7), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Aug. 2005/mm7), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb mm7
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainMm7
release alpha
subTrack chainNetMm7
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain mm7
track netMm7
release alpha
subTrack chainNetMm7
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign mm7 chainMm7
# release alpha until mm6 individual chain/net tracks phased out
track chainNetMm6
release alpha
compositeTrack on
-shortLabel Mouse Chain/Net
-longLabel Mouse (Mar. 2005/mm6), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Mar. 2005/mm6), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb mm6
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainMm6
release alpha
subTrack chainNetMm6
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain mm6
track netMm6
release alpha
subTrack chainNetMm6
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign mm6 chainMm6
# release alpha until rn4 individual chain/net tracks phased out
track chainNetRn4
release alpha
compositeTrack on
-shortLabel Rat Chain/Net
-longLabel Rat (Nov. 2004/rn4), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Nov. 2004/rn4), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 209
color 100,50,0
altColor 255,240,200
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb rn4
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainRn4
release alpha
subTrack chainNetRn4
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain rn4
track netRn4
release alpha
subTrack chainNetRn4
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign rn4 chainRn4
# release alpha until rn3 individual chain/net tracks phased out
track chainNetRn3
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
-longLabel Rat (Jun. 2003/rn3), Chain and Net Alignments
+longLabel $o_Organism (Jun. 2003/rn3), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 209
color 100,50,0
altColor 255,240,200
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb rn3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainRn3
release alpha
subTrack chainNetRn3
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain rn3
track netRn3
release alpha
subTrack chainNetRn3
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign rn3 chainRn3
track chainNetEquCab2
compositeTrack on
-shortLabel Horse Chain/Net
-longLabel Horse (Sep. 2007/equCab2), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Sep. 2007/equCab2), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb equCab2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainEquCab2
subTrack chainNetEquCab2
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain equCab2
track netEquCab2
subTrack chainNetEquCab2
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign equCab2 chainEquCab2
# release alpha until bosTau4 individual tracks phased out
track chainNetBosTau4
release alpha
compositeTrack on
-shortLabel Cow Chain/Net
-longLabel Cow (Oct. 2007/bosTau4), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Oct. 2007/bosTau4), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb bosTau4
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainBosTau4
release alpha
subTrack chainNetBosTau4
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain bosTau4
track netBosTau4
release alpha
subTrack chainNetBosTau4
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign bosTau4 chainBosTau4
# release alpha until bosTau3 individual tracks phased out
track chainNetBosTau3
release alpha
compositeTrack on
-shortLabel Cow Chain/Net
-longLabel Cow (Aug. 2006/bosTau3), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Aug. 2006/bosTau3), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb bosTau3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainBosTau3
release alpha
subTrack chainNetBosTau3
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain bosTau3
track netBosTau3
release alpha
subTrack chainNetBosTau3
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign bosTau3 chainBosTau3
# release alpha until bosTau2 individual tracks phased out
track chainNetBosTau2
release alpha
compositeTrack on
-shortLabel Cow Chain/Net
-longLabel Cow (Mar. 2005/bosTau2), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Mar. 2005/bosTau2), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb bosTau2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainBosTau2
release alpha
subTrack chainNetBosTau2
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain bosTau2
track netBosTau2
release alpha
subTrack chainNetBosTau2
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign bosTau2 chainBosTau2
# release alpha until canFam2 individual tracks phased out
track chainNetCanFam2
release alpha
compositeTrack on
-shortLabel Dog Chain/Net
-longLabel Dog (May 2005/canFam2), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (May 2005/canFam2), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb canFam2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainCanFam2
release alpha
subTrack chainNetCanFam2
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain canFam2
track netCanFam2
release alpha
subTrack chainNetCanFam2
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign canFam2 chainCanFam2
# release alpha until felCat3 individual tracks phased out
track chainNetFelCat3
release alpha
compositeTrack on
-shortLabel Cat Chain/Net
-longLabel Cat (Mar. 2006/felCat3), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Mar. 2006/felCat3), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb felCat3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainFelCat3
release alpha
subTrack chainNetFelCat3
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain felCat3
track netFelCat3
release alpha
subTrack chainNetFelCat3
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign felCat3 chainFelCat3
track chainNetVenter
compositeTrack on
shortLabel Venter Chain/Net
longLabel J. Craig Venter Chain and Net Alignments
subGroup1 view Views chain=Chains net=Nets
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 500
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
track chainVenter1
subTrack chainNetVenter off
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
color 100,50,0
altColor 255,240,200
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
type chain venter1
otherDb venter1
track netVenter1
subTrack chainNetVenter off
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign venter1 chainVenter1
otherDb venter1
track chainNetHg18
release alpha
compositeTrack on
-shortLabel Human Chain/Net
-longLabel Human (Mar. 2006/hg18), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Mar. 2006/hg18), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb hg18
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainHg18
release alpha
subTrack chainNetHg18
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain hg18
track netHg18
release alpha
subTrack chainNetHg18
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign hg18 chainHg18
track chainNetHg19
compositeTrack on
-shortLabel Human Chain/Net
-longLabel Human (Feb. 2009/hg19), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Feb. 2009/hg19), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb hg19
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainHg19
subTrack chainNetHg19
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain hg19
track netHg19
subTrack chainNetHg19
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign hg19 chainHg19
track chainNetHg17
release alpha
compositeTrack on
-shortLabel Human Chain/Net
-longLabel Human (May. 2004/hg17), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (May. 2004/hg17), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb hg17
chainMinScore 1000
chainLinearGap loose
html chainNet
track chainHg17
release alpha
subTrack chainNetHg17
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain hg17
track netHg17
release alpha
subTrack chainNetHg17
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign hg17 chainHg17
track chainNetPanTro2
release alpha
compositeTrack on
-shortLabel Chimp Chain/Net
-longLabel Chimp (Mar. 2006/panTro2), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Mar. 2006/panTro2), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb panTro2
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainPanTro2
release alpha
subTrack chainNetPanTro2
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain panTro2
track netPanTro2
release alpha
subTrack chainNetPanTro2
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign panTro2 chainPanTro2
track chainNetPanTro1
release alpha
compositeTrack on
-shortLabel Chimp Chain/Net
-longLabel Chimp (Nov. 2003/panTro1), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Nov. 2003/panTro1), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb panTro1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainPanTro1
release alpha
subTrack chainNetPanTro1
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain panTro1
track netPanTro1
release alpha
subTrack chainNetPanTro1
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign panTro1 chainPanTro1
track chainNetPonAbe2
release alpha
compositeTrack on
-shortLabel Orangutan Chain/Net
-longLabel Orangutan (Jul. 2007/ponAbe2), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Jul. 2007/ponAbe2), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb ponAbe2
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainPonAbe2
release alpha
subTrack chainNetPonAbe2
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain ponAbe2
track netPonAbe2
release alpha
subTrack chainNetPonAbe2
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign ponAbe2 chainPonAbe2
track chainNetCalJac1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism (Jan. 2006/calJac1), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb calJac1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainCalJac1
release alpha
subTrack chainNetCalJac1
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain calJac1
track netCalJac1
release alpha
subTrack chainNetCalJac1
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign calJac1 chainCalJac1
track chainNetRheMac2
release alpha
compositeTrack on
-shortLabel Rhesus Chain/Net
-longLabel Rhesus (Jan. 2006/rheMac2), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Jan. 2006/rheMac2), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb rheMac2
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainRheMac2
release alpha
subTrack chainNetRheMac2
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain rheMac2
track netRheMac2
release alpha
subTrack chainNetRheMac2
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign rheMac2 chainRheMac2
track chainNetRheMac1
release alpha
compositeTrack on
-shortLabel Rhesus Chain/Net
-longLabel Rhesus (Jan. 2005/rheMac1), Chain and Net Alignments
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism (Jan. 2005/rheMac1), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb rheMac1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainRheMac1
release alpha
subTrack chainNetRheMac1
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain rheMac1
track netRheMac1
release alpha
subTrack chainNetRheMac1
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign rheMac1 chainRheMac1
track chainNetPoodle
compositeTrack on
shortLabel Poodle Chain/Net
longLabel Poodle Chain and Net Alignments
subGroup1 view Views chain=Chains net=Nets
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 500
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
track chainCanFamPoodle1
subTrack chainNetPoodle off
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
color 100,50,0
altColor 255,240,200
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
type chain canFamPoodle1
otherDb canFamPoodle1
track netCanFamPoodle1
subTrack chainNetPoodle off
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign canFamPoodle1 chainCanFamPoodle1
otherDb canFamPoodle1