Index: src/hg/makeDb/trackDb/trackDb.chainNet.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.chainNet.ra,v
retrieving revision 1.26
retrieving revision 1.27
diff -b -B -U 1000000 -r1.26 -r1.27
--- src/hg/makeDb/trackDb/trackDb.chainNet.ra	28 Dec 2009 23:43:28 -0000	1.26
+++ src/hg/makeDb/trackDb/trackDb.chainNet.ra	29 Dec 2009 23:27:33 -0000	1.27
@@ -1,2087 +1,2451 @@
 #	"$Id$";
 
 # release alpha until individual fr2 tracks are obsolete
 track chainNetFr2
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Oct. 2004/fr2), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb fr2
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainFr2
     release alpha
     subTrack chainNetFr2
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain fr2
 
     track netFr2
     release alpha
     subTrack chainNetFr2
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign fr2 chainFr2
 
 # release alpha until individual fr1 tracks are obsolete
 track chainNetFr1
 release alpha
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism (Aug. 2002/fr1), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb fr1
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainFr1
     release alpha
     subTrack chainNetFr1
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain fr1
 
     track netFr1
     release alpha
     subTrack chainNetFr1
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign fr1 chainFr1
 
 track chainNetTetNig2
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Mar. 2007/tetNig2), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb tetNig2
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainTetNig2
     subTrack chainNetTetNig2
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain tetNig2
 
     track netTetNig2
     subTrack chainNetTetNig2
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign tetNig2 chainTetNig2
 
 track chainNetTetNig1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Feb. 2004/tetNig1), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb tetNig1
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainTetNig1
     release alpha
     subTrack chainNetTetNig1
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain tetNig1
 
     track netTetNig1
     release alpha
     subTrack chainNetTetNig1
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign tetNig1 chainTetNig1
 
 track chainNetDanRer6
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism (Dec. 2008/danRer6), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb danRer6
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainDanRer6
     subTrack chainNetDanRer6
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain danRer6
 
     track netDanRer6
     subTrack chainNetDanRer6
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign danRer6 chainDanRer6
 
 track chainNetDanRer5
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Dec. 2008/danRer5), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb danRer5
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainDanRer5
     release alpha
     subTrack chainNetDanRer5
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain danRer5
 
     track netDanRer5
     release alpha
     subTrack chainNetDanRer5
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign danRer5 chainDanRer5
 
 track chainNetDanRer4
 release alpha
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism (Dec. 2008/danRer4), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb danRer4
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainDanRer4
     release alpha
     subTrack chainNetDanRer4
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain danRer4
 
     track netDanRer4
     release alpha
     subTrack chainNetDanRer4
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign danRer4 chainDanRer4
 
 track chainNetDanRer3
 release alpha
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism (Dec. 2008/danRer3), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb danRer3
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainDanRer3
     release alpha
     subTrack chainNetDanRer3
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain danRer3
 
     track netDanRer3
     release alpha
     subTrack chainNetDanRer3
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign danRer3 chainDanRer3
 
 track chainNetDanRer2
 release alpha
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism (Dec. 2008/danRer2), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb danRer2
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainDanRer2
     release alpha
     subTrack chainNetDanRer2
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain danRer2
 
     track netDanRer2
     release alpha
     subTrack chainNetDanRer2
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign danRer2 chainDanRer2
 
 track chainNetDanRer1
 release alpha
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism (Dec. 2008/danRer1), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb danRer1
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainDanRer1
     release alpha
     subTrack chainNetDanRer1
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain danRer1
 
     track netDanRer1
     release alpha
     subTrack chainNetDanRer1
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign danRer1 chainDanRer1
 
 track chainNetXenTro2
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Aug. 2005/xenTro2), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb xenTro2
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainXenTro2
     release alpha
     subTrack chainNetXenTro2
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain xenTro2
 
     track netXenTro2
     release alpha
     subTrack chainNetXenTro2
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign xenTro2 chainXenTro2
 
 track chainNetXenTro1
 release alpha
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism (Oct. 2004/xenTro1), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb xenTro1
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainXenTro1
     release alpha
     subTrack chainNetXenTro1
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain xenTro1
 
     track netXenTro1
     release alpha
     subTrack chainNetXenTro1
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign xenTro1 chainXenTro1
 
 # release alpha until individual oryLat2 tracks are obsolete
 track chainNetOryLat2
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Oct. 2005/oryLat2), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 165.5
 color 100,50,0
 altColor 255,240,200
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb oryLat2
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainOryLat2
     release alpha
     subTrack chainNetOryLat2
     subGroups view=chain
     shortLabel $o_Organism Chain 
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain oryLat2
     otherDb oryLat2
 
     track netOryLat2
     release alpha
     subTrack chainNetOryLat2
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign oryLat2 chainOryLat2
     otherDb oryLat2
 
 # release alpha since oryLat1 is obsolete
 track chainNetOryLat1
 release alpha
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism (Oct. 2005/oryLat1), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 165.5
 color 100,50,0
 altColor 255,240,200
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb oryLat1
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainOryLat1
     release alpha
     subTrack chainNetOryLat1
     subGroups view=chain
     shortLabel $o_Organism Chain 
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain oryLat1
     otherDb oryLat1
 
     track netOryLat1
     release alpha
     subTrack chainNetOryLat1
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign oryLat1 chainOryLat1
     otherDb oryLat1
 
 # release alpha until individual gasAcu1 tracks are obsolete
 track chainNetGasAcu1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Feb 2006/gasAcu1), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 181
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb gasAcu1
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainGasAcu1
     release alpha
     subTrack chainNetGasAcu1
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain gasAcu1
 
     track netGasAcu1
     release alpha
     subTrack chainNetGasAcu1
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign gasAcu1 chainGasAcu1
 
 # release alpha until individual galGal3 tracks are obsolete
 track chainNetGalGal3
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (May 2006/galGal3), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 181
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb galGal3
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainGalGal3
     release alpha
     subTrack chainNetGalGal3
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain galGal3
 
     track netGalGal3
     release alpha
     subTrack chainNetGalGal3
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign galGal3 chainGalGal3
 
 # release alpha until individual galGal2 tracks are obsolete
 track chainNetGalGal2
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Feb 2004/galGal2), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 181
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb galGal2
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainGalGal2
     release alpha
     subTrack chainNetGalGal2
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain galGal2
 
     track netGalGal2
     release alpha
     subTrack chainNetGalGal2
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign galGal2 chainGalGal2
 
 # release alpha until individual taeGut1 tracks are obsolete
 track chainNetTaeGut1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Jul. 2008/taeGut1), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 181
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb taeGut1
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainTaeGut1
     release alpha
     subTrack chainNetTaeGut1
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain taeGut1
 
     track netTaeGut1
     release alpha
     subTrack chainNetTaeGut1
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign taeGut1 chainTaeGut1
 
 # release alpha until ornAna1 individual chain/net tracks phased out
 track chainNetOrnAna1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Mar. 2007/ornAna1), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 191
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb ornAna1
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainOrnAna1
     release alpha
     subTrack chainNetOrnAna1
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain ornAna1
 
     track netOrnAna1
     release alpha
     subTrack chainNetOrnAna1
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign ornAna1 chainOrnAna1
 
 # release alpha until anoCar1 individual chain/net tracks phased out
 track chainNetAnoCar1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Feb. 2007/anoCar1), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 191
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb anoCar1
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainAnoCar1
     release alpha
     subTrack chainNetAnoCar1
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain anoCar1
 
     track netAnoCar1
     release alpha
     subTrack chainNetAnoCar1
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign anoCar1 chainAnoCar1
 
 # release alpha until petMar1 individual chain/net tracks phased out
 track chainNetPetMar1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Mar. 2007/petMar1), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 191
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb petMar1
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainPetMar1
     release alpha
     subTrack chainNetPetMar1
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain petMar1
 
     track netPetMar1
     release alpha
     subTrack chainNetPetMar1
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign petMar1 chainPetMar1
 
 # release alpha until braFlo1 individual chain/net tracks phased out
 track chainNetBraFlo1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Mar. 2006/braFlo1), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 191
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb braFlo1
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainBraFlo1
     release alpha
     subTrack chainNetBraFlo1
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain braFlo1
 
     track netBraFlo1
     release alpha
     subTrack chainNetBraFlo1
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign braFlo1 chainBraFlo1
 
+track chainNetLoxAfr2
+release alpha
+compositeTrack on
+shortLabel $o_db Chain/Net
+longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
+group compGeno
+noInherit on
+priority 191
+color 100,50,0
+altColor 255,240,200
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
+matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+matrixHeader A, C, G, T
+otherDb loxAfr2
+chainMinScore 3000
+chainLinearGap medium
+spectrum on
+html chainNet
+
+    track chainLoxAfr2
+    release alpha
+    subTrack chainNetLoxAfr2
+    subGroups view=chain
+    shortLabel $o_Organism Chain
+    longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+    type chain loxAfr2
+
+    track netLoxAfr2
+    release alpha
+    subTrack chainNetLoxAfr2
+    subGroups view=net
+    shortLabel $o_Organism Net
+    longLabel $o_Organism ($o_date/$o_db) Alignment Net
+    type netAlign loxAfr2 chainLoxAfr2
+
+track chainNetLoxAfr1
+release alpha
+compositeTrack on
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
+group compGeno
+noInherit on
+priority 191
+color 100,50,0
+altColor 255,240,200
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
+matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+matrixHeader A, C, G, T
+otherDb loxAfr1
+chainMinScore 3000
+chainLinearGap medium
+spectrum on
+html chainNet
+
+    track chainLoxAfr1
+    release alpha
+    subTrack chainNetLoxAfr1
+    subGroups view=chain
+    shortLabel $o_Organism Chain
+    longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+    type chain loxAfr1
+
+    track netLoxAfr1
+    release alpha
+    subTrack chainNetLoxAfr1
+    subGroups view=net
+    shortLabel $o_Organism Net
+    longLabel $o_Organism ($o_date/$o_db) Alignment Net
+    type netAlign loxAfr1 chainLoxAfr1
+
 track chainNetMonDom1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Oct. 2004/monDom1), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 191
 color 100,50,0
 altColor 255,240,200
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb monDom1
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainMonDom1
     release alpha
     subTrack chainNetMonDom1
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain monDom1
 
     track netMonDom1
     release alpha
     subTrack chainNetMonDom1
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign monDom1 chainMonDom1
 
 track chainNetMonDom4
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Jan. 2006/monDom4), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 191
 color 100,50,0
 altColor 255,240,200
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb monDom4
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainMonDom4
     release alpha
     subTrack chainNetMonDom4
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain monDom4
 
     track netMonDom4
     release alpha
     subTrack chainNetMonDom4
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign monDom4 chainMonDom4
 
 track chainNetMonDom5
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Oct. 2006/monDom5), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 191
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb monDom5
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainMonDom5
     subTrack chainNetMonDom5
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain monDom5
 
     track netMonDom5
     subTrack chainNetMonDom5
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign monDom5 chainMonDom5
 
+track chainNetEriEur1
+release alpha
+compositeTrack on
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
+group compGeno
+noInherit on
+priority 191
+color 0,0,0
+altColor 255,255,0
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
+matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+matrixHeader A, C, G, T
+otherDb eriEur1
+chainMinScore 3000
+chainLinearGap medium
+spectrum on
+html chainNet
+
+    track chainEriEur1
+    subTrack chainNetEriEur1
+    subGroups view=chain
+    shortLabel $o_Organism Chain
+    longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+    type chain eriEur1
+
+    track netEriEur1
+    subTrack chainNetEriEur1
+    subGroups view=net
+    shortLabel $o_Organism Net
+    longLabel $o_Organism ($o_date/$o_db) Alignment Net
+    type netAlign eriEur1 chainEriEur1
+
+track chainNetSorAra1
+release alpha
+compositeTrack on
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
+group compGeno
+noInherit on
+priority 209
+color 0,0,0
+altColor 255,255,0
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
+matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+matrixHeader A, C, G, T
+otherDb sorAra1
+chainMinScore 3000
+chainLinearGap medium
+spectrum on
+html chainNet
+
+    track chainSorAra1
+    release alpha
+    subTrack chainNetSorAra1
+    subGroups view=chain
+    shortLabel $o_Organism Chain
+    longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+    type chain sorAra1
+
+    track netSorAra1
+    release alpha
+    subTrack chainNetSorAra1
+    subGroups view=net
+    shortLabel $o_Organism Net
+    longLabel $o_Organism ($o_date/$o_db) Alignment Net
+    type netAlign sorAra1 chainSorAra1
+
 # release alpha until mm9 individual chain/net tracks phased out
 track chainNetMm9
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Jul. 2007/mm9), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 209
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb mm9
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainMm9
     release alpha
     subTrack chainNetMm9
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain mm9
 
     track netMm9
     release alpha
     subTrack chainNetMm9
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign mm9 chainMm9
 
 # release alpha until mm8 individual chain/net tracks phased out
 track chainNetMm8
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Feb. 2006/mm8), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 209
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb mm8
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainMm8
     release alpha
     subTrack chainNetMm8
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain mm8
 
     track netMm8
     release alpha
     subTrack chainNetMm8
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign mm8 chainMm8
 
 # release alpha until mm7 individual chain/net tracks phased out
 track chainNetMm7
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Aug. 2005/mm7), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 209
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb mm7
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainMm7
     release alpha
     subTrack chainNetMm7
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain mm7
 
     track netMm7
     release alpha
     subTrack chainNetMm7
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign mm7 chainMm7
 
 # release alpha until mm6 individual chain/net tracks phased out
 track chainNetMm6
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Mar. 2005/mm6), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 209
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb mm6
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainMm6
     release alpha
     subTrack chainNetMm6
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain mm6
 
     track netMm6
     release alpha
     subTrack chainNetMm6
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign mm6 chainMm6
 
 # release alpha until rn4 individual chain/net tracks phased out
 track chainNetRn4
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Nov. 2004/rn4), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 209
 color 100,50,0
 altColor 255,240,200
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb rn4
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainRn4
     release alpha
     subTrack chainNetRn4
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain rn4
 
     track netRn4
     release alpha
     subTrack chainNetRn4
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign rn4 chainRn4
 
 # release alpha until rn3 individual chain/net tracks phased out
 track chainNetRn3
 release alpha
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism (Jun. 2003/rn3), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 209
 color 100,50,0
 altColor 255,240,200
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb rn3
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainRn3
     release alpha
     subTrack chainNetRn3
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain rn3
 
     track netRn3
     release alpha
     subTrack chainNetRn3
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign rn3 chainRn3
 
 # release alpha until cavPor3 individual chain/net tracks phased out
 track chainNetCavPor3
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Feb. 2008/cavPor3), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 209
 color 100,50,0
 altColor 255,240,200
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb cavPor3
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainCavPor3
     release alpha
     subTrack chainNetCavPor3
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain cavPor3
 
     track netCavPor3
     release alpha
     subTrack chainNetCavPor3
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign cavPor3 chainCavPor3
 
 # release alpha until cavPor2 individual chain/net tracks phased out
 track chainNetCavPor2
 release alpha
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism (Oct. 2005/cavPor2), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 209
 color 100,50,0
 altColor 255,240,200
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb cavPor2
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainCavPor2
     release alpha
     subTrack chainNetCavPor2
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain cavPor2
 
     track netCavPor2
     release alpha
     subTrack chainNetCavPor2
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign cavPor2 chainCavPor2
 
+track chainNetOryCun2
+release alpha
+compositeTrack on
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
+group compGeno
+noInherit on
+priority 209
+color 100,50,0
+altColor 255,240,200
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
+matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+matrixHeader A, C, G, T
+otherDb oryCun2
+chainMinScore 3000
+chainLinearGap medium
+spectrum on
+html chainNet
+
+    track chainOryCun2
+    release alpha
+    subTrack chainNetOryCun2
+    subGroups view=chain
+    shortLabel $o_Organism Chain
+    longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+    type chain oryCun2
+
+    track netOryCun2
+    release alpha
+    subTrack chainNetOryCun2
+    subGroups view=net
+    shortLabel $o_Organism Net
+    longLabel $o_Organism ($o_date/$o_db) Alignment Net
+    type netAlign oryCun2 chainOryCun2
+
+track chainNetOryCun1
+release alpha
+compositeTrack on
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
+group compGeno
+noInherit on
+priority 209
+color 100,50,0
+altColor 255,240,200
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
+matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+matrixHeader A, C, G, T
+otherDb oryCun1
+chainMinScore 3000
+chainLinearGap medium
+spectrum on
+html chainNet
+
+    track chainOryCun1
+    release alpha
+    subTrack chainNetOryCun1
+    subGroups view=chain
+    shortLabel $o_Organism Chain
+    longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+    type chain oryCun1
+
+    track netOryCun1
+    release alpha
+    subTrack chainNetOryCun1
+    subGroups view=net
+    shortLabel $o_Organism Net
+    longLabel $o_Organism ($o_date/$o_db) Alignment Net
+    type netAlign oryCun1 chainOryCun1
+
 track chainNetEquCab2
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Sep. 2007/equCab2), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 240
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb equCab2
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainEquCab2
     subTrack chainNetEquCab2
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain equCab2
 
     track netEquCab2
     subTrack chainNetEquCab2
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign equCab2 chainEquCab2
 
 track chainNetEquCab1
 release alpha
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism (Jan. 2007/equCab1), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 240
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb equCab1
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainEquCab1
     release alpha
     subTrack chainNetEquCab1
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain equCab1
 
     track netEquCab1
     release alpha
     subTrack chainNetEquCab1
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign equCab1 chainEquCab1
 
 # release alpha until bosTau4 individual tracks phased out
 track chainNetBosTau4
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Oct. 2007/bosTau4), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 240
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb bosTau4
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainBosTau4
     release alpha
     subTrack chainNetBosTau4
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain bosTau4
 
     track netBosTau4
     release alpha
     subTrack chainNetBosTau4
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign bosTau4 chainBosTau4
 
 # release alpha until bosTau3 individual tracks phased out
 track chainNetBosTau3
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Aug. 2006/bosTau3), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 240
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb bosTau3
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainBosTau3
     release alpha
     subTrack chainNetBosTau3
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain bosTau3
 
     track netBosTau3
     release alpha
     subTrack chainNetBosTau3
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign bosTau3 chainBosTau3
 
 # release alpha until bosTau2 individual tracks phased out
 track chainNetBosTau2
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Mar. 2005/bosTau2), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 240
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb bosTau2
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainBosTau2
     release alpha
     subTrack chainNetBosTau2
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain bosTau2
 
     track netBosTau2
     release alpha
     subTrack chainNetBosTau2
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign bosTau2 chainBosTau2
 
 # release alpha until canFam2 individual tracks phased out
 track chainNetCanFam2
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (May 2005/canFam2), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 240
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb canFam2
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainCanFam2
     release alpha
     subTrack chainNetCanFam2
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain canFam2
 
     track netCanFam2
     release alpha
     subTrack chainNetCanFam2
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign canFam2 chainCanFam2
 
 # release alpha until felCat3 individual tracks phased out
 track chainNetFelCat3
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Mar. 2006/felCat3), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 240
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb felCat3
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainFelCat3
     release alpha
     subTrack chainNetFelCat3
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain felCat3
 
     track netFelCat3
     release alpha
     subTrack chainNetFelCat3
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign felCat3 chainFelCat3
 
 track chainNetVenter
 compositeTrack on
 shortLabel Venter Chain/Net
 longLabel J. Craig Venter Chain and Net Alignments
 subGroup1 view Views chain=Chains net=Nets
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 500
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 
     track chainVenter1
     subTrack chainNetVenter off
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     color 100,50,0
     altColor 255,240,200
     matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
     matrixHeader A, C, G, T
     type chain venter1
     otherDb venter1
 
     track netVenter1
     subTrack chainNetVenter off
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign venter1 chainVenter1
     otherDb venter1
 
 track chainNetHg18
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Mar. 2006/hg18), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 498
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
 matrixHeader A, C, G, T
 otherDb hg18
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainHg18
     release alpha
     subTrack chainNetHg18
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain hg18
 
     track netHg18
     release alpha
     subTrack chainNetHg18
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment net
     type netAlign hg18 chainHg18
 
 track chainNetHg19
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Feb. 2009/hg19), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 498
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
 matrixHeader A, C, G, T
 otherDb hg19
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainHg19
     subTrack chainNetHg19
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain hg19
 
     track netHg19
     subTrack chainNetHg19
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment net
     type netAlign hg19 chainHg19
 
 track chainNetHg17
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (May. 2004/hg17), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 498
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb hg17
 chainMinScore 1000
 chainLinearGap loose
 html chainNet
 
     track chainHg17
     release alpha
     subTrack chainNetHg17
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain hg17
 
     track netHg17
     release alpha
     subTrack chainNetHg17
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment net
     type netAlign hg17 chainHg17
 
 track chainNetPanTro2
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Mar. 2006/panTro2), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 498
 color 100,50,0
 altColor 255,240,200
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
 matrixHeader A, C, G, T
 otherDb panTro2
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainPanTro2
     release alpha
     subTrack chainNetPanTro2
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain panTro2
 
     track netPanTro2
     release alpha
     subTrack chainNetPanTro2
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment net
     type netAlign panTro2 chainPanTro2
 
 track chainNetPanTro1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Nov. 2003/panTro1), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 498
 color 100,50,0
 altColor 255,240,200
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
 matrixHeader A, C, G, T
 otherDb panTro1
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainPanTro1
     release alpha
     subTrack chainNetPanTro1
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain panTro1
 
     track netPanTro1
     release alpha
     subTrack chainNetPanTro1
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment net
     type netAlign panTro1 chainPanTro1
 
+track chainNetGorGor1
+release alpha
+compositeTrack on
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
+group compGeno
+noInherit on
+priority 498
+color 100,50,0
+altColor 255,240,200
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
+matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+matrixHeader A, C, G, T
+otherDb gorGor1
+chainMinScore 3000
+chainLinearGap medium
+html chainNet
+
+    track chainGorGor1
+    release alpha
+    subTrack chainNetGorGor1
+    subGroups view=chain
+    shortLabel $o_Organism Chain
+    longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+    type chain gorGor1
+
+    track netGorGor1
+    release alpha
+    subTrack chainNetGorGor1
+    subGroups view=net
+    shortLabel $o_Organism Net
+    longLabel $o_Organism ($o_date/$o_db) Alignment net
+    type netAlign gorGor1 chainGorGor1
+
 track chainNetPonAbe2
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Jul. 2007/ponAbe2), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 498
 color 100,50,0
 altColor 255,240,200
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
 matrixHeader A, C, G, T
 otherDb ponAbe2
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainPonAbe2
     release alpha
     subTrack chainNetPonAbe2
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain ponAbe2
 
     track netPonAbe2
     release alpha
     subTrack chainNetPonAbe2
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment net
     type netAlign ponAbe2 chainPonAbe2
 
+track chainNetTupBel1
+release alpha
+compositeTrack on
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
+group compGeno
+noInherit on
+priority 498
+color 100,50,0
+altColor 255,240,200
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
+matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+matrixHeader A, C, G, T
+otherDb tupBel1
+chainMinScore 3000
+chainLinearGap medium
+html chainNet
+
+    track chainTupBel1
+    release alpha
+    subTrack chainNetTupBel1
+    subGroups view=chain
+    shortLabel $o_Organism Chain
+    longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+    type chain tupBel1
+
+    track netTupBel1
+    release alpha
+    subTrack chainNetTupBel1
+    subGroups view=net
+    shortLabel $o_Organism Net
+    longLabel $o_Organism ($o_date/$o_db) Alignment net
+    type netAlign tupBel1 chainTupBel1
+
+track chainNetOtoGar1
+release alpha
+compositeTrack on
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
+group compGeno
+noInherit on
+priority 498
+color 100,50,0
+altColor 255,240,200
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
+matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+matrixHeader A, C, G, T
+otherDb otoGar1
+chainMinScore 3000
+chainLinearGap medium
+html chainNet
+
+    track chainOtoGar1
+    release alpha
+    subTrack chainNetOtoGar1
+    subGroups view=chain
+    shortLabel $o_Organism Chain
+    longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+    type chain otoGar1
+
+    track netOtoGar1
+    release alpha
+    subTrack chainNetOtoGar1
+    subGroups view=net
+    shortLabel $o_Organism Net
+    longLabel $o_Organism ($o_date/$o_db) Alignment net
+    type netAlign otoGar1 chainOtoGar1
+
 track chainNetCalJac1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Jan. 2006/calJac1), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 498
 color 100,50,0
 altColor 255,240,200
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb calJac1
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainCalJac1
     release alpha
     subTrack chainNetCalJac1
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain calJac1
 
     track netCalJac1
     release alpha
     subTrack chainNetCalJac1
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment net
     type netAlign calJac1 chainCalJac1
 
 track chainNetRheMac2
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Jan. 2006/rheMac2), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 498
 color 100,50,0
 altColor 255,240,200
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb rheMac2
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainRheMac2
     release alpha
     subTrack chainNetRheMac2
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain rheMac2
 
     track netRheMac2
     release alpha
     subTrack chainNetRheMac2
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment net
     type netAlign rheMac2 chainRheMac2
 
 track chainNetRheMac1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism (Jan. 2005/rheMac1), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 498
 color 100,50,0
 altColor 255,240,200
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb rheMac1
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainRheMac1
     release alpha
     subTrack chainNetRheMac1
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain rheMac1
 
     track netRheMac1
     release alpha
     subTrack chainNetRheMac1
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment net
     type netAlign rheMac1 chainRheMac1
 
 track chainNetPoodle
 compositeTrack on
 shortLabel Poodle Chain/Net
 longLabel Poodle Chain and Net Alignments
 subGroup1 view Views chain=Chains net=Nets
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 500
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 
     track chainCanFamPoodle1
     subTrack chainNetPoodle off
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     color 100,50,0
     altColor 255,240,200
     matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
     matrixHeader A, C, G, T
     type chain canFamPoodle1
     otherDb canFamPoodle1
 
     track netCanFamPoodle1
     subTrack chainNetPoodle off
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign canFamPoodle1 chainCanFamPoodle1
     otherDb canFamPoodle1

