src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.30
1.30 2010/01/04 19:12:31 kent
Merging viewInTheMiddle branch.
Index: src/hg/makeDb/trackDb/trackDb.chainNet.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.chainNet.ra,v
retrieving revision 1.29
retrieving revision 1.30
diff -b -B -U 1000000 -r1.29 -r1.30
--- src/hg/makeDb/trackDb/trackDb.chainNet.ra 30 Dec 2009 19:50:12 -0000 1.29
+++ src/hg/makeDb/trackDb/trackDb.chainNet.ra 4 Jan 2010 19:12:31 -0000 1.30
@@ -1,2616 +1,3332 @@
# "$Id$";
# release alpha until individual fr2 tracks are obsolete
track chainNetFr2
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb fr2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
+ track chainNetFr2Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetFr2
+ spectrum on
+
track chainFr2
release alpha
- subTrack chainNetFr2
+ subTrack chainNetFr2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain fr2
+ track chainNetFr2Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetFr2
+
track netFr2
release alpha
- subTrack chainNetFr2
+ subTrack chainNetFr2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign fr2 chainFr2
# release alpha until individual fr1 tracks are obsolete
track chainNetFr1
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb fr1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
+ track chainNetFr1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetFr1
+ spectrum on
+
track chainFr1
release alpha
- subTrack chainNetFr1
+ subTrack chainNetFr1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain fr1
+ track chainNetFr1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetFr1
+
track netFr1
release alpha
- subTrack chainNetFr1
+ subTrack chainNetFr1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign fr1 chainFr1
track chainNetTetNig2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb tetNig2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
- track chainTetNig2
+ track chainNetTetNig2Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
subTrack chainNetTetNig2
+ spectrum on
+
+ track chainTetNig2
+ subTrack chainNetTetNig2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain tetNig2
- track netTetNig2
+ track chainNetTetNig2Viewnet
+ shortLabel Net
+ view net
+ visibility dense
subTrack chainNetTetNig2
+
+ track netTetNig2
+ subTrack chainNetTetNig2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign tetNig2 chainTetNig2
track chainNetTetNig1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb tetNig1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
+ track chainNetTetNig1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetTetNig1
+ spectrum on
+
track chainTetNig1
release alpha
- subTrack chainNetTetNig1
+ subTrack chainNetTetNig1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain tetNig1
+ track chainNetTetNig1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetTetNig1
+
track netTetNig1
release alpha
- subTrack chainNetTetNig1
+ subTrack chainNetTetNig1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign tetNig1 chainTetNig1
track chainNetDanRer6
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer6
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
- track chainDanRer6
+ track chainNetDanRer6Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
subTrack chainNetDanRer6
+ spectrum on
+
+ track chainDanRer6
+ subTrack chainNetDanRer6Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain danRer6
- track netDanRer6
+ track chainNetDanRer6Viewnet
+ shortLabel Net
+ view net
+ visibility dense
subTrack chainNetDanRer6
+
+ track netDanRer6
+ subTrack chainNetDanRer6Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign danRer6 chainDanRer6
track chainNetDanRer5
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer5
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
+ track chainNetDanRer5Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetDanRer5
+ spectrum on
+
track chainDanRer5
release alpha
- subTrack chainNetDanRer5
+ subTrack chainNetDanRer5Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain danRer5
+ track chainNetDanRer5Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetDanRer5
+
track netDanRer5
release alpha
- subTrack chainNetDanRer5
+ subTrack chainNetDanRer5Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign danRer5 chainDanRer5
track chainNetDanRer4
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer4
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
+ track chainNetDanRer4Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetDanRer4
+ spectrum on
+
track chainDanRer4
release alpha
- subTrack chainNetDanRer4
+ subTrack chainNetDanRer4Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain danRer4
+ track chainNetDanRer4Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetDanRer4
+
track netDanRer4
release alpha
- subTrack chainNetDanRer4
+ subTrack chainNetDanRer4Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign danRer4 chainDanRer4
track chainNetDanRer3
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer3
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
+ track chainNetDanRer3Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetDanRer3
+ spectrum on
+
track chainDanRer3
release alpha
- subTrack chainNetDanRer3
+ subTrack chainNetDanRer3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain danRer3
+ track chainNetDanRer3Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetDanRer3
+
track netDanRer3
release alpha
- subTrack chainNetDanRer3
+ subTrack chainNetDanRer3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign danRer3 chainDanRer3
track chainNetDanRer2
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
+ track chainNetDanRer2Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetDanRer2
+ spectrum on
+
track chainDanRer2
release alpha
- subTrack chainNetDanRer2
+ subTrack chainNetDanRer2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain danRer2
+ track chainNetDanRer2Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetDanRer2
+
track netDanRer2
release alpha
- subTrack chainNetDanRer2
+ subTrack chainNetDanRer2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign danRer2 chainDanRer2
track chainNetDanRer1
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
+ track chainNetDanRer1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetDanRer1
+ spectrum on
+
track chainDanRer1
release alpha
- subTrack chainNetDanRer1
+ subTrack chainNetDanRer1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain danRer1
+ track chainNetDanRer1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetDanRer1
+
track netDanRer1
release alpha
- subTrack chainNetDanRer1
+ subTrack chainNetDanRer1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign danRer1 chainDanRer1
track chainNetXenTro2
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb xenTro2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
+ track chainNetXenTro2Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetXenTro2
+ spectrum on
+
track chainXenTro2
release alpha
- subTrack chainNetXenTro2
+ subTrack chainNetXenTro2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain xenTro2
+ track chainNetXenTro2Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetXenTro2
+
track netXenTro2
release alpha
- subTrack chainNetXenTro2
+ subTrack chainNetXenTro2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign xenTro2 chainXenTro2
track chainNetXenTro1
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb xenTro1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
+ track chainNetXenTro1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetXenTro1
+ spectrum on
+
track chainXenTro1
release alpha
- subTrack chainNetXenTro1
+ subTrack chainNetXenTro1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain xenTro1
+ track chainNetXenTro1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetXenTro1
+
track netXenTro1
release alpha
- subTrack chainNetXenTro1
+ subTrack chainNetXenTro1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign xenTro1 chainXenTro1
# release alpha until individual oryLat2 tracks are obsolete
track chainNetOryLat2
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 165.5
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb oryLat2
chainMinScore 3000
chainLinearGap medium
html chainNet
+ track chainNetOryLat2Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetOryLat2
+ spectrum on
+
track chainOryLat2
release alpha
- subTrack chainNetOryLat2
+ subTrack chainNetOryLat2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain oryLat2
otherDb oryLat2
+ track chainNetOryLat2Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetOryLat2
+
track netOryLat2
release alpha
- subTrack chainNetOryLat2
+ subTrack chainNetOryLat2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign oryLat2 chainOryLat2
otherDb oryLat2
# release alpha since oryLat1 is obsolete
track chainNetOryLat1
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 165.5
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb oryLat1
chainMinScore 3000
chainLinearGap medium
html chainNet
+ track chainNetOryLat1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetOryLat1
+ spectrum on
+
track chainOryLat1
release alpha
- subTrack chainNetOryLat1
+ subTrack chainNetOryLat1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain oryLat1
otherDb oryLat1
+ track chainNetOryLat1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetOryLat1
+
track netOryLat1
release alpha
- subTrack chainNetOryLat1
+ subTrack chainNetOryLat1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign oryLat1 chainOryLat1
otherDb oryLat1
# release alpha until individual gasAcu1 tracks are obsolete
track chainNetGasAcu1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb gasAcu1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
+ track chainNetGasAcu1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetGasAcu1
+ spectrum on
+
track chainGasAcu1
release alpha
- subTrack chainNetGasAcu1
+ subTrack chainNetGasAcu1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain gasAcu1
+ track chainNetGasAcu1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetGasAcu1
+
track netGasAcu1
release alpha
- subTrack chainNetGasAcu1
+ subTrack chainNetGasAcu1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign gasAcu1 chainGasAcu1
# release alpha until individual galGal3 tracks are obsolete
track chainNetGalGal3
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb galGal3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
+ track chainNetGalGal3Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetGalGal3
+ spectrum on
+
track chainGalGal3
release alpha
- subTrack chainNetGalGal3
+ subTrack chainNetGalGal3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain galGal3
+ track chainNetGalGal3Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetGalGal3
+
track netGalGal3
release alpha
- subTrack chainNetGalGal3
+ subTrack chainNetGalGal3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign galGal3 chainGalGal3
# release alpha until individual galGal2 tracks are obsolete
track chainNetGalGal2
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb galGal2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
+ track chainNetGalGal2Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetGalGal2
+ spectrum on
+
track chainGalGal2
release alpha
- subTrack chainNetGalGal2
+ subTrack chainNetGalGal2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain galGal2
+ track chainNetGalGal2Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetGalGal2
+
track netGalGal2
release alpha
- subTrack chainNetGalGal2
+ subTrack chainNetGalGal2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign galGal2 chainGalGal2
# release alpha until individual taeGut1 tracks are obsolete
track chainNetTaeGut1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb taeGut1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
+ track chainNetTaeGut1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetTaeGut1
+ spectrum on
+
track chainTaeGut1
release alpha
- subTrack chainNetTaeGut1
+ subTrack chainNetTaeGut1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain taeGut1
+ track chainNetTaeGut1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetTaeGut1
+
track netTaeGut1
release alpha
- subTrack chainNetTaeGut1
+ subTrack chainNetTaeGut1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign taeGut1 chainTaeGut1
# release alpha until ornAna1 individual chain/net tracks phased out
track chainNetOrnAna1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 191
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb ornAna1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
+ track chainNetOrnAna1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetOrnAna1
+ spectrum on
+
track chainOrnAna1
release alpha
- subTrack chainNetOrnAna1
+ subTrack chainNetOrnAna1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain ornAna1
+ track chainNetOrnAna1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetOrnAna1
+
track netOrnAna1
release alpha
- subTrack chainNetOrnAna1
+ subTrack chainNetOrnAna1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign ornAna1 chainOrnAna1
# release alpha until anoCar1 individual chain/net tracks phased out
track chainNetAnoCar1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 191
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb anoCar1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
+ track chainNetAnoCar1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetAnoCar1
+ spectrum on
+
track chainAnoCar1
release alpha
- subTrack chainNetAnoCar1
+ subTrack chainNetAnoCar1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain anoCar1
+ track chainNetAnoCar1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetAnoCar1
+
track netAnoCar1
release alpha
- subTrack chainNetAnoCar1
+ subTrack chainNetAnoCar1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign anoCar1 chainAnoCar1
# release alpha until petMar1 individual chain/net tracks phased out
track chainNetPetMar1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 191
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb petMar1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
+ track chainNetPetMar1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetPetMar1
+ spectrum on
+
track chainPetMar1
release alpha
- subTrack chainNetPetMar1
+ subTrack chainNetPetMar1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain petMar1
+ track chainNetPetMar1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetPetMar1
+
track netPetMar1
release alpha
- subTrack chainNetPetMar1
+ subTrack chainNetPetMar1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign petMar1 chainPetMar1
# release alpha until braFlo1 individual chain/net tracks phased out
track chainNetBraFlo1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 191
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb braFlo1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
+ track chainNetBraFlo1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetBraFlo1
+ spectrum on
+
track chainBraFlo1
release alpha
- subTrack chainNetBraFlo1
+ subTrack chainNetBraFlo1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain braFlo1
+ track chainNetBraFlo1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetBraFlo1
+
track netBraFlo1
release alpha
- subTrack chainNetBraFlo1
+ subTrack chainNetBraFlo1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign braFlo1 chainBraFlo1
track chainNetLoxAfr3
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 191
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb loxAfr3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
- track chainLoxAfr3
+ track chainNetLoxAfr3Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
subTrack chainNetLoxAfr3
+ spectrum on
+
+ track chainLoxAfr3
+ subTrack chainNetLoxAfr3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain loxAfr3
- track netLoxAfr3
+ track chainNetLoxAfr3Viewnet
+ shortLabel Net
+ view net
+ visibility dense
subTrack chainNetLoxAfr3
+
+ track netLoxAfr3
+ subTrack chainNetLoxAfr3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign loxAfr3 chainLoxAfr3
track chainNetLoxAfr2
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 191
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb loxAfr2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
- track chainLoxAfr2
+ track chainNetLoxAfr2Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
subTrack chainNetLoxAfr2
+ spectrum on
+
+ track chainLoxAfr2
+ subTrack chainNetLoxAfr2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain loxAfr2
- track netLoxAfr2
+ track chainNetLoxAfr2Viewnet
+ shortLabel Net
+ view net
+ visibility dense
subTrack chainNetLoxAfr2
+
+ track netLoxAfr2
+ subTrack chainNetLoxAfr2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign loxAfr2 chainLoxAfr2
track chainNetLoxAfr1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 191
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb loxAfr1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
- track chainLoxAfr1
+ track chainNetLoxAfr1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
subTrack chainNetLoxAfr1
+ spectrum on
+
+ track chainLoxAfr1
+ subTrack chainNetLoxAfr1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain loxAfr1
- track netLoxAfr1
+ track chainNetLoxAfr1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
subTrack chainNetLoxAfr1
+
+ track netLoxAfr1
+ subTrack chainNetLoxAfr1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign loxAfr1 chainLoxAfr1
track chainNetMonDom1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 191
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb monDom1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
+ track chainNetMonDom1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetMonDom1
+ spectrum on
+
track chainMonDom1
release alpha
- subTrack chainNetMonDom1
+ subTrack chainNetMonDom1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain monDom1
+ track chainNetMonDom1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetMonDom1
+
track netMonDom1
release alpha
- subTrack chainNetMonDom1
+ subTrack chainNetMonDom1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign monDom1 chainMonDom1
track chainNetMonDom4
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 191
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb monDom4
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
+ track chainNetMonDom4Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetMonDom4
+ spectrum on
+
track chainMonDom4
release alpha
- subTrack chainNetMonDom4
+ subTrack chainNetMonDom4Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain monDom4
+ track chainNetMonDom4Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetMonDom4
+
track netMonDom4
release alpha
- subTrack chainNetMonDom4
+ subTrack chainNetMonDom4Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign monDom4 chainMonDom4
track chainNetMonDom5
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 191
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb monDom5
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
- track chainMonDom5
+ track chainNetMonDom5Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
subTrack chainNetMonDom5
+ spectrum on
+
+ track chainMonDom5
+ subTrack chainNetMonDom5Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain monDom5
- track netMonDom5
+ track chainNetMonDom5Viewnet
+ shortLabel Net
+ view net
+ visibility dense
subTrack chainNetMonDom5
+
+ track netMonDom5
+ subTrack chainNetMonDom5Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign monDom5 chainMonDom5
track chainNetEriEur1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 191
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb eriEur1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
- track chainEriEur1
+ track chainNetEriEur1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
subTrack chainNetEriEur1
+ spectrum on
+
+ track chainEriEur1
+ subTrack chainNetEriEur1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain eriEur1
- track netEriEur1
+ track chainNetEriEur1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
subTrack chainNetEriEur1
+
+ track netEriEur1
+ subTrack chainNetEriEur1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign eriEur1 chainEriEur1
track chainNetSorAra1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb sorAra1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
- track chainSorAra1
+ track chainNetSorAra1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
subTrack chainNetSorAra1
+ spectrum on
+
+ track chainSorAra1
+ subTrack chainNetSorAra1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain sorAra1
- track netSorAra1
+ track chainNetSorAra1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
subTrack chainNetSorAra1
+
+ track netSorAra1
+ subTrack chainNetSorAra1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign sorAra1 chainSorAra1
# release alpha until mm9 individual chain/net tracks phased out
track chainNetMm9
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb mm9
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
+ track chainNetMm9Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetMm9
+ spectrum on
+
track chainMm9
release alpha
- subTrack chainNetMm9
+ subTrack chainNetMm9Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain mm9
+ track chainNetMm9Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetMm9
+
track netMm9
release alpha
- subTrack chainNetMm9
+ subTrack chainNetMm9Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign mm9 chainMm9
# release alpha until mm8 individual chain/net tracks phased out
track chainNetMm8
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb mm8
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
+ track chainNetMm8Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetMm8
+ spectrum on
+
track chainMm8
release alpha
- subTrack chainNetMm8
+ subTrack chainNetMm8Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain mm8
+ track chainNetMm8Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetMm8
+
track netMm8
release alpha
- subTrack chainNetMm8
+ subTrack chainNetMm8Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign mm8 chainMm8
# release alpha until mm7 individual chain/net tracks phased out
track chainNetMm7
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb mm7
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
+ track chainNetMm7Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetMm7
+ spectrum on
+
track chainMm7
release alpha
- subTrack chainNetMm7
+ subTrack chainNetMm7Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain mm7
+ track chainNetMm7Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetMm7
+
track netMm7
release alpha
- subTrack chainNetMm7
+ subTrack chainNetMm7Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign mm7 chainMm7
# release alpha until mm6 individual chain/net tracks phased out
track chainNetMm6
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb mm6
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
+ track chainNetMm6Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetMm6
+ spectrum on
+
track chainMm6
release alpha
- subTrack chainNetMm6
+ subTrack chainNetMm6Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain mm6
+ track chainNetMm6Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetMm6
+
track netMm6
release alpha
- subTrack chainNetMm6
+ subTrack chainNetMm6Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign mm6 chainMm6
# release alpha until rn4 individual chain/net tracks phased out
track chainNetRn4
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 209
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb rn4
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
+ track chainNetRn4Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetRn4
+ spectrum on
+
track chainRn4
release alpha
- subTrack chainNetRn4
+ subTrack chainNetRn4Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain rn4
+ track chainNetRn4Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetRn4
+
track netRn4
release alpha
- subTrack chainNetRn4
+ subTrack chainNetRn4Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign rn4 chainRn4
# release alpha until rn3 individual chain/net tracks phased out
track chainNetRn3
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 209
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb rn3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
+ track chainNetRn3Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetRn3
+ spectrum on
+
track chainRn3
release alpha
- subTrack chainNetRn3
+ subTrack chainNetRn3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain rn3
+ track chainNetRn3Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetRn3
+
track netRn3
release alpha
- subTrack chainNetRn3
+ subTrack chainNetRn3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign rn3 chainRn3
# release alpha until cavPor3 individual chain/net tracks phased out
track chainNetCavPor3
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 209
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb cavPor3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
+ track chainNetCavPor3Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetCavPor3
+ spectrum on
+
track chainCavPor3
release alpha
- subTrack chainNetCavPor3
+ subTrack chainNetCavPor3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain cavPor3
+ track chainNetCavPor3Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetCavPor3
+
track netCavPor3
release alpha
- subTrack chainNetCavPor3
+ subTrack chainNetCavPor3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign cavPor3 chainCavPor3
# release alpha until cavPor2 individual chain/net tracks phased out
track chainNetCavPor2
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 209
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb cavPor2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
+ track chainNetCavPor2Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetCavPor2
+ spectrum on
+
track chainCavPor2
release alpha
- subTrack chainNetCavPor2
+ subTrack chainNetCavPor2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain cavPor2
+ track chainNetCavPor2Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetCavPor2
+
track netCavPor2
release alpha
- subTrack chainNetCavPor2
+ subTrack chainNetCavPor2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign cavPor2 chainCavPor2
track chainNetOryCun2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 209
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb oryCun2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
- track chainOryCun2
+ track chainNetOryCun2Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
subTrack chainNetOryCun2
+ spectrum on
+
+ track chainOryCun2
+ subTrack chainNetOryCun2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain oryCun2
- track netOryCun2
+ track chainNetOryCun2Viewnet
+ shortLabel Net
+ view net
+ visibility dense
subTrack chainNetOryCun2
+
+ track netOryCun2
+ subTrack chainNetOryCun2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign oryCun2 chainOryCun2
track chainNetOryCun1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 209
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb oryCun1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
- track chainOryCun1
+ track chainNetOryCun1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
subTrack chainNetOryCun1
+ spectrum on
+
+ track chainOryCun1
+ subTrack chainNetOryCun1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain oryCun1
- track netOryCun1
+ track chainNetOryCun1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
subTrack chainNetOryCun1
+
+ track netOryCun1
+ subTrack chainNetOryCun1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign oryCun1 chainOryCun1
track chainNetEquCab2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb equCab2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
- track chainEquCab2
+ track chainNetEquCab2Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
subTrack chainNetEquCab2
+ spectrum on
+
+ track chainEquCab2
+ subTrack chainNetEquCab2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain equCab2
- track netEquCab2
+ track chainNetEquCab2Viewnet
+ shortLabel Net
+ view net
+ visibility dense
subTrack chainNetEquCab2
+
+ track netEquCab2
+ subTrack chainNetEquCab2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign equCab2 chainEquCab2
track chainNetEquCab1
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb equCab1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
+ track chainNetEquCab1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetEquCab1
+ spectrum on
+
track chainEquCab1
release alpha
- subTrack chainNetEquCab1
+ subTrack chainNetEquCab1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain equCab1
+ track chainNetEquCab1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetEquCab1
+
track netEquCab1
release alpha
- subTrack chainNetEquCab1
+ subTrack chainNetEquCab1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign equCab1 chainEquCab1
track chainNetEchTel1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb echTel1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
- track chainEchTel1
+ track chainNetEchTel1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
subTrack chainNetEchTel1
+ spectrum on
+
+ track chainEchTel1
+ subTrack chainNetEchTel1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain echTel1
- track netEchTel1
+ track chainNetEchTel1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
subTrack chainNetEchTel1
+
+ track netEchTel1
+ subTrack chainNetEchTel1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign echTel1 chainEchTel1
track chainNetDasNov2
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb dasNov2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
- track chainDasNov2
+ track chainNetDasNov2Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
subTrack chainNetDasNov2
+ spectrum on
+
+ track chainDasNov2
+ subTrack chainNetDasNov2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain dasNov2
- track netDasNov2
+ track chainNetDasNov2Viewnet
+ shortLabel Net
+ view net
+ visibility dense
subTrack chainNetDasNov2
+
+ track netDasNov2
+ subTrack chainNetDasNov2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign dasNov2 chainDasNov2
track chainNetDasNov1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb dasNov1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
- track chainDasNov1
+ track chainNetDasNov1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
subTrack chainNetDasNov1
+ spectrum on
+
+ track chainDasNov1
+ subTrack chainNetDasNov1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain dasNov1
- track netDasNov1
+ track chainNetDasNov1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
subTrack chainNetDasNov1
+
+ track netDasNov1
+ subTrack chainNetDasNov1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign dasNov1 chainDasNov1
# release alpha until bosTau4 individual tracks phased out
track chainNetBosTau4
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb bosTau4
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
+ track chainNetBosTau4Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetBosTau4
+ spectrum on
+
track chainBosTau4
release alpha
- subTrack chainNetBosTau4
+ subTrack chainNetBosTau4Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain bosTau4
+ track chainNetBosTau4Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetBosTau4
+
track netBosTau4
release alpha
- subTrack chainNetBosTau4
+ subTrack chainNetBosTau4Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign bosTau4 chainBosTau4
# release alpha until bosTau3 individual tracks phased out
track chainNetBosTau3
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb bosTau3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
+ track chainNetBosTau3Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetBosTau3
+ spectrum on
+
track chainBosTau3
release alpha
- subTrack chainNetBosTau3
+ subTrack chainNetBosTau3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain bosTau3
+ track chainNetBosTau3Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetBosTau3
+
track netBosTau3
release alpha
- subTrack chainNetBosTau3
+ subTrack chainNetBosTau3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign bosTau3 chainBosTau3
# release alpha until bosTau2 individual tracks phased out
track chainNetBosTau2
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb bosTau2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
+ track chainNetBosTau2Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetBosTau2
+ spectrum on
+
track chainBosTau2
release alpha
- subTrack chainNetBosTau2
+ subTrack chainNetBosTau2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain bosTau2
+ track chainNetBosTau2Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetBosTau2
+
track netBosTau2
release alpha
- subTrack chainNetBosTau2
+ subTrack chainNetBosTau2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign bosTau2 chainBosTau2
track chainNetBosTau1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb bosTau1
chainMinScore 1000
chainLinearGap loose
spectrum on
html chainNet
- track chainBosTau1
+ track chainNetBosTau1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
subTrack chainNetBosTau1
+ spectrum on
+
+ track chainBosTau1
+ subTrack chainNetBosTau1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain bosTau1
- track netBosTau1
+ track chainNetBosTau1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
subTrack chainNetBosTau1
+
+ track netBosTau1
+ subTrack chainNetBosTau1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign bosTau1 chainBosTau1
# release alpha until canFam2 individual tracks phased out
track chainNetCanFam2
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb canFam2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
+ track chainNetCanFam2Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetCanFam2
+ spectrum on
+
track chainCanFam2
release alpha
- subTrack chainNetCanFam2
+ subTrack chainNetCanFam2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain canFam2
+ track chainNetCanFam2Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetCanFam2
+
track netCanFam2
release alpha
- subTrack chainNetCanFam2
+ subTrack chainNetCanFam2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign canFam2 chainCanFam2
# release alpha until felCat3 individual tracks phased out
track chainNetFelCat3
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb felCat3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
+ track chainNetFelCat3Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetFelCat3
+ spectrum on
+
track chainFelCat3
release alpha
- subTrack chainNetFelCat3
+ subTrack chainNetFelCat3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain felCat3
+ track chainNetFelCat3Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetFelCat3
+
track netFelCat3
release alpha
- subTrack chainNetFelCat3
+ subTrack chainNetFelCat3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign felCat3 chainFelCat3
track chainNetVenter
compositeTrack on
shortLabel Venter Chain/Net
longLabel J. Craig Venter Chain and Net Alignments
subGroup1 view Views chain=Chains net=Nets
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 500
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
+ track chainNetVenterViewchain
+ shortLabel Chains
+ view chain
+ visibility pack
+ subTrack chainNetVenter
+ spectrum on
+
track chainVenter1
- subTrack chainNetVenter off
+ subTrack chainNetVenterViewchain off
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
color 100,50,0
altColor 255,240,200
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
type chain venter1
otherDb venter1
+ track chainNetVenterViewnet
+ shortLabel Nets
+ view net
+ visibility dense
+ subTrack chainNetVenter
+
track netVenter1
- subTrack chainNetVenter off
+ subTrack chainNetVenterViewnet off
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign venter1 chainVenter1
otherDb venter1
track chainNetHg18
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb hg18
chainMinScore 3000
chainLinearGap medium
html chainNet
+ track chainNetHg18Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetHg18
+ spectrum on
+
track chainHg18
release alpha
- subTrack chainNetHg18
+ subTrack chainNetHg18Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain hg18
+ track chainNetHg18Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetHg18
+
track netHg18
release alpha
- subTrack chainNetHg18
+ subTrack chainNetHg18Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign hg18 chainHg18
track chainNetHg19
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb hg19
chainMinScore 3000
chainLinearGap medium
html chainNet
- track chainHg19
+ track chainNetHg19Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
subTrack chainNetHg19
+ spectrum on
+
+ track chainHg19
+ subTrack chainNetHg19Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain hg19
- track netHg19
+ track chainNetHg19Viewnet
+ shortLabel Net
+ view net
+ visibility dense
subTrack chainNetHg19
+
+ track netHg19
+ subTrack chainNetHg19Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign hg19 chainHg19
track chainNetHg17
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb hg17
chainMinScore 1000
chainLinearGap loose
html chainNet
+ track chainNetHg17Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetHg17
+ spectrum on
+
track chainHg17
release alpha
- subTrack chainNetHg17
+ subTrack chainNetHg17Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain hg17
+ track chainNetHg17Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetHg17
+
track netHg17
release alpha
- subTrack chainNetHg17
+ subTrack chainNetHg17Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign hg17 chainHg17
track chainNetPanTro2
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb panTro2
chainMinScore 3000
chainLinearGap medium
html chainNet
+ track chainNetPanTro2Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetPanTro2
+ spectrum on
+
track chainPanTro2
release alpha
- subTrack chainNetPanTro2
+ subTrack chainNetPanTro2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain panTro2
+ track chainNetPanTro2Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetPanTro2
+
track netPanTro2
release alpha
- subTrack chainNetPanTro2
+ subTrack chainNetPanTro2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign panTro2 chainPanTro2
track chainNetPanTro1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb panTro1
chainMinScore 3000
chainLinearGap medium
html chainNet
+ track chainNetPanTro1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetPanTro1
+ spectrum on
+
track chainPanTro1
release alpha
- subTrack chainNetPanTro1
+ subTrack chainNetPanTro1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain panTro1
+ track chainNetPanTro1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetPanTro1
+
track netPanTro1
release alpha
- subTrack chainNetPanTro1
+ subTrack chainNetPanTro1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign panTro1 chainPanTro1
track chainNetGorGor1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb gorGor1
chainMinScore 3000
chainLinearGap medium
html chainNet
- track chainGorGor1
+ track chainNetGorGor1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
subTrack chainNetGorGor1
+ spectrum on
+
+ track chainGorGor1
+ subTrack chainNetGorGor1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain gorGor1
- track netGorGor1
+ track chainNetGorGor1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
subTrack chainNetGorGor1
+
+ track netGorGor1
+ subTrack chainNetGorGor1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign gorGor1 chainGorGor1
track chainNetPonAbe2
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb ponAbe2
chainMinScore 3000
chainLinearGap medium
html chainNet
+ track chainNetPonAbe2Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetPonAbe2
+ spectrum on
+
track chainPonAbe2
release alpha
- subTrack chainNetPonAbe2
+ subTrack chainNetPonAbe2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain ponAbe2
+ track chainNetPonAbe2Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetPonAbe2
+
track netPonAbe2
release alpha
- subTrack chainNetPonAbe2
+ subTrack chainNetPonAbe2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign ponAbe2 chainPonAbe2
track chainNetTupBel1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb tupBel1
chainMinScore 3000
chainLinearGap medium
html chainNet
- track chainTupBel1
+ track chainNetTupBel1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
subTrack chainNetTupBel1
+ spectrum on
+
+ track chainTupBel1
+ subTrack chainNetTupBel1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain tupBel1
- track netTupBel1
+ track chainNetTupBel1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
subTrack chainNetTupBel1
+
+ track netTupBel1
+ subTrack chainNetTupBel1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign tupBel1 chainTupBel1
track chainNetOtoGar1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb otoGar1
chainMinScore 3000
chainLinearGap medium
html chainNet
- track chainOtoGar1
+ track chainNetOtoGar1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
subTrack chainNetOtoGar1
+ spectrum on
+
+ track chainOtoGar1
+ subTrack chainNetOtoGar1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain otoGar1
- track netOtoGar1
+ track chainNetOtoGar1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
subTrack chainNetOtoGar1
+
+ track netOtoGar1
+ subTrack chainNetOtoGar1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign otoGar1 chainOtoGar1
track chainNetCalJac1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb calJac1
chainMinScore 3000
chainLinearGap medium
html chainNet
+ track chainNetCalJac1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetCalJac1
+ spectrum on
+
track chainCalJac1
release alpha
- subTrack chainNetCalJac1
+ subTrack chainNetCalJac1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain calJac1
+ track chainNetCalJac1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetCalJac1
+
track netCalJac1
release alpha
- subTrack chainNetCalJac1
+ subTrack chainNetCalJac1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign calJac1 chainCalJac1
track chainNetRheMac2
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb rheMac2
chainMinScore 3000
chainLinearGap medium
html chainNet
+ track chainNetRheMac2Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetRheMac2
+ spectrum on
+
track chainRheMac2
release alpha
- subTrack chainNetRheMac2
+ subTrack chainNetRheMac2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain rheMac2
+ track chainNetRheMac2Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetRheMac2
+
track netRheMac2
release alpha
- subTrack chainNetRheMac2
+ subTrack chainNetRheMac2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign rheMac2 chainRheMac2
track chainNetRheMac1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb rheMac1
chainMinScore 3000
chainLinearGap medium
html chainNet
+ track chainNetRheMac1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetRheMac1
+ spectrum on
+
track chainRheMac1
release alpha
- subTrack chainNetRheMac1
+ subTrack chainNetRheMac1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain rheMac1
+ track chainNetRheMac1Viewnet
+ shortLabel Net
+ view net
+ visibility dense
+ subTrack chainNetRheMac1
+
track netRheMac1
release alpha
- subTrack chainNetRheMac1
+ subTrack chainNetRheMac1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign rheMac1 chainRheMac1
track chainNetPoodle
compositeTrack on
shortLabel Poodle Chain/Net
longLabel Poodle Chain and Net Alignments
subGroup1 view Views chain=Chains net=Nets
dragAndDrop subTracks
visibility hide
-visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 500
color 0,0,0
altColor 255,255,0
type bed 3
-settingsByView chain:spectrum=on
sortOrder view=+
+ track chainNetPoodleViewchain
+ shortLabel Chains
+ view chain
+ visibility pack
+ subTrack chainNetPoodle
+ spectrum on
+
track chainCanFamPoodle1
- subTrack chainNetPoodle off
+ subTrack chainNetPoodleViewchain off
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
color 100,50,0
altColor 255,240,200
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
type chain canFamPoodle1
otherDb canFamPoodle1
+ track chainNetPoodleViewnet
+ shortLabel Nets
+ view net
+ visibility dense
+ subTrack chainNetPoodle
+
track netCanFamPoodle1
- subTrack chainNetPoodle off
+ subTrack chainNetPoodleViewnet off
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign canFamPoodle1 chainCanFamPoodle1
otherDb canFamPoodle1
+