Index: src/hg/makeDb/trackDb/trackDb.chainNet.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.chainNet.ra,v
retrieving revision 1.31
retrieving revision 1.32
diff -b -B -U 1000000 -r1.31 -r1.32
--- src/hg/makeDb/trackDb/trackDb.chainNet.ra	4 Jan 2010 19:59:30 -0000	1.31
+++ src/hg/makeDb/trackDb/trackDb.chainNet.ra	4 Jan 2010 20:27:00 -0000	1.32
@@ -1,3408 +1,3411 @@
 #	"$Id$";
 
 # release alpha until individual fr2 tracks are obsolete
 track chainNetFr2
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb fr2
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainNetFr2Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetFr2
     spectrum on
 
         track chainFr2
         release alpha
         subTrack chainNetFr2Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain fr2
 
     track chainNetFr2Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetFr2
 
         track netFr2
         release alpha
         subTrack chainNetFr2Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign fr2 chainFr2
 
 # release alpha until individual fr1 tracks are obsolete
 track chainNetFr1
 release alpha
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb fr1
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainNetFr1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetFr1
     spectrum on
 
         track chainFr1
         release alpha
         subTrack chainNetFr1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain fr1
 
     track chainNetFr1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetFr1
 
         track netFr1
         release alpha
         subTrack chainNetFr1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign fr1 chainFr1
 
 track chainNetTetNig2
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb tetNig2
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainNetTetNig2Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetTetNig2
     spectrum on
 
         track chainTetNig2
         subTrack chainNetTetNig2Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain tetNig2
 
     track chainNetTetNig2Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetTetNig2
 
         track netTetNig2
         subTrack chainNetTetNig2Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign tetNig2 chainTetNig2
 
 track chainNetTetNig1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb tetNig1
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainNetTetNig1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetTetNig1
     spectrum on
 
         track chainTetNig1
         release alpha
         subTrack chainNetTetNig1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain tetNig1
 
     track chainNetTetNig1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetTetNig1
 
         track netTetNig1
         release alpha
         subTrack chainNetTetNig1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign tetNig1 chainTetNig1
 
 track chainNetDanRer6
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb danRer6
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainNetDanRer6Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetDanRer6
     spectrum on
 
         track chainDanRer6
         subTrack chainNetDanRer6Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain danRer6
 
     track chainNetDanRer6Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetDanRer6
 
         track netDanRer6
         subTrack chainNetDanRer6Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign danRer6 chainDanRer6
 
 track chainNetDanRer5
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb danRer5
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainNetDanRer5Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetDanRer5
     spectrum on
 
         track chainDanRer5
         release alpha
         subTrack chainNetDanRer5Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain danRer5
 
     track chainNetDanRer5Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetDanRer5
 
         track netDanRer5
         release alpha
         subTrack chainNetDanRer5Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign danRer5 chainDanRer5
 
 track chainNetDanRer4
 release alpha
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb danRer4
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainNetDanRer4Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetDanRer4
     spectrum on
 
         track chainDanRer4
         release alpha
         subTrack chainNetDanRer4Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain danRer4
 
     track chainNetDanRer4Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetDanRer4
 
         track netDanRer4
         release alpha
         subTrack chainNetDanRer4Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign danRer4 chainDanRer4
 
 track chainNetDanRer3
 release alpha
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb danRer3
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainNetDanRer3Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetDanRer3
     spectrum on
 
         track chainDanRer3
         release alpha
         subTrack chainNetDanRer3Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain danRer3
 
     track chainNetDanRer3Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetDanRer3
 
         track netDanRer3
         release alpha
         subTrack chainNetDanRer3Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign danRer3 chainDanRer3
 
 track chainNetDanRer2
 release alpha
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb danRer2
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainNetDanRer2Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetDanRer2
     spectrum on
 
         track chainDanRer2
         release alpha
         subTrack chainNetDanRer2Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain danRer2
 
     track chainNetDanRer2Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetDanRer2
 
         track netDanRer2
         release alpha
         subTrack chainNetDanRer2Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign danRer2 chainDanRer2
 
 track chainNetDanRer1
 release alpha
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb danRer1
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainNetDanRer1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetDanRer1
     spectrum on
 
         track chainDanRer1
         release alpha
         subTrack chainNetDanRer1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain danRer1
 
     track chainNetDanRer1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetDanRer1
 
         track netDanRer1
         release alpha
         subTrack chainNetDanRer1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign danRer1 chainDanRer1
 
 track chainNetXenTro2
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb xenTro2
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainNetXenTro2Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetXenTro2
     spectrum on
 
         track chainXenTro2
         release alpha
         subTrack chainNetXenTro2Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain xenTro2
 
     track chainNetXenTro2Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetXenTro2
 
         track netXenTro2
         release alpha
         subTrack chainNetXenTro2Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign xenTro2 chainXenTro2
 
 track chainNetXenTro1
 release alpha
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 159
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb xenTro1
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainNetXenTro1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetXenTro1
     spectrum on
 
         track chainXenTro1
         release alpha
         subTrack chainNetXenTro1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain xenTro1
 
     track chainNetXenTro1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetXenTro1
 
         track netXenTro1
         release alpha
         subTrack chainNetXenTro1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign xenTro1 chainXenTro1
 
 # release alpha until individual oryLat2 tracks are obsolete
 track chainNetOryLat2
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 165.5
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb oryLat2
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainNetOryLat2Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetOryLat2
     spectrum on
 
         track chainOryLat2
         release alpha
         subTrack chainNetOryLat2Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain 
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain oryLat2
         otherDb oryLat2
 
     track chainNetOryLat2Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetOryLat2
 
         track netOryLat2
         release alpha
         subTrack chainNetOryLat2Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign oryLat2 chainOryLat2
         otherDb oryLat2
 
 # release alpha since oryLat1 is obsolete
 track chainNetOryLat1
 release alpha
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 165.5
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb oryLat1
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainNetOryLat1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetOryLat1
     spectrum on
 
         track chainOryLat1
         release alpha
         subTrack chainNetOryLat1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain 
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain oryLat1
         otherDb oryLat1
 
     track chainNetOryLat1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetOryLat1
 
         track netOryLat1
         release alpha
         subTrack chainNetOryLat1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign oryLat1 chainOryLat1
         otherDb oryLat1
 
 # release alpha until individual gasAcu1 tracks are obsolete
 track chainNetGasAcu1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 181
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb gasAcu1
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetGasAcu1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetGasAcu1
     spectrum on
 
         track chainGasAcu1
         release alpha
         subTrack chainNetGasAcu1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain gasAcu1
 
     track chainNetGasAcu1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetGasAcu1
 
         track netGasAcu1
         release alpha
         subTrack chainNetGasAcu1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign gasAcu1 chainGasAcu1
 
 # release alpha until individual galGal3 tracks are obsolete
 track chainNetGalGal3
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 181
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb galGal3
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetGalGal3Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetGalGal3
     spectrum on
 
         track chainGalGal3
         release alpha
         subTrack chainNetGalGal3Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain galGal3
 
     track chainNetGalGal3Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetGalGal3
 
         track netGalGal3
         release alpha
         subTrack chainNetGalGal3Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign galGal3 chainGalGal3
 
 # release alpha until individual galGal2 tracks are obsolete
 track chainNetGalGal2
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 181
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb galGal2
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainNetGalGal2Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetGalGal2
     spectrum on
 
         track chainGalGal2
         release alpha
         subTrack chainNetGalGal2Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain galGal2
 
     track chainNetGalGal2Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetGalGal2
 
         track netGalGal2
         release alpha
         subTrack chainNetGalGal2Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign galGal2 chainGalGal2
 
 # release alpha until individual taeGut1 tracks are obsolete
 track chainNetTaeGut1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 181
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb taeGut1
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainNetTaeGut1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetTaeGut1
     spectrum on
 
         track chainTaeGut1
         release alpha
         subTrack chainNetTaeGut1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain taeGut1
 
     track chainNetTaeGut1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetTaeGut1
 
         track netTaeGut1
         release alpha
         subTrack chainNetTaeGut1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign taeGut1 chainTaeGut1
 
 # release alpha until ornAna1 individual chain/net tracks phased out
 track chainNetOrnAna1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 191
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb ornAna1
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetOrnAna1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetOrnAna1
     spectrum on
 
         track chainOrnAna1
         release alpha
         subTrack chainNetOrnAna1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain ornAna1
 
     track chainNetOrnAna1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetOrnAna1
 
         track netOrnAna1
         release alpha
         subTrack chainNetOrnAna1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign ornAna1 chainOrnAna1
 
 # release alpha until anoCar1 individual chain/net tracks phased out
 track chainNetAnoCar1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 191
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb anoCar1
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainNetAnoCar1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetAnoCar1
     spectrum on
 
         track chainAnoCar1
         release alpha
         subTrack chainNetAnoCar1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain anoCar1
 
     track chainNetAnoCar1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetAnoCar1
 
         track netAnoCar1
         release alpha
         subTrack chainNetAnoCar1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign anoCar1 chainAnoCar1
 
 # release alpha until petMar1 individual chain/net tracks phased out
 track chainNetPetMar1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 191
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb petMar1
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainNetPetMar1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetPetMar1
     spectrum on
 
         track chainPetMar1
         release alpha
         subTrack chainNetPetMar1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain petMar1
 
     track chainNetPetMar1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetPetMar1
 
         track netPetMar1
         release alpha
         subTrack chainNetPetMar1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign petMar1 chainPetMar1
 
 # release alpha until braFlo1 individual chain/net tracks phased out
 track chainNetBraFlo1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 191
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb braFlo1
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainNetBraFlo1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetBraFlo1
     spectrum on
 
         track chainBraFlo1
         release alpha
         subTrack chainNetBraFlo1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain braFlo1
 
     track chainNetBraFlo1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetBraFlo1
 
         track netBraFlo1
         release alpha
         subTrack chainNetBraFlo1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign braFlo1 chainBraFlo1
 
 track chainNetMacEug1
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 191
 color 100,50,0
 altColor 255,240,200
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb macEug1
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainMacEug1
     subTrack chainNetMacEug1
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain macEug1
 
     track netMacEug1
     subTrack chainNetMacEug1
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign macEug1 chainMacEug1
 
 track chainNetLoxAfr3
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 191
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb loxAfr3
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetLoxAfr3Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetLoxAfr3
     spectrum on
 
         track chainLoxAfr3
         subTrack chainNetLoxAfr3Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain loxAfr3
 
     track chainNetLoxAfr3Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetLoxAfr3
 
         track netLoxAfr3
         subTrack chainNetLoxAfr3Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign loxAfr3 chainLoxAfr3
 
 track chainNetLoxAfr2
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 191
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb loxAfr2
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetLoxAfr2Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetLoxAfr2
     spectrum on
 
         track chainLoxAfr2
         subTrack chainNetLoxAfr2Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain loxAfr2
 
     track chainNetLoxAfr2Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetLoxAfr2
 
         track netLoxAfr2
         subTrack chainNetLoxAfr2Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign loxAfr2 chainLoxAfr2
 
 track chainNetLoxAfr1
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 191
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb loxAfr1
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetLoxAfr1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetLoxAfr1
     spectrum on
 
         track chainLoxAfr1
         subTrack chainNetLoxAfr1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain loxAfr1
 
     track chainNetLoxAfr1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetLoxAfr1
 
         track netLoxAfr1
         subTrack chainNetLoxAfr1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign loxAfr1 chainLoxAfr1
 
 track chainNetMonDom1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 191
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb monDom1
 chainMinScore 5000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainNetMonDom1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetMonDom1
     spectrum on
 
         track chainMonDom1
         release alpha
         subTrack chainNetMonDom1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain monDom1
 
     track chainNetMonDom1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetMonDom1
 
         track netMonDom1
         release alpha
         subTrack chainNetMonDom1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign monDom1 chainMonDom1
 
 track chainNetMonDom4
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 191
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
 matrixHeader A, C, G, T
 otherDb monDom4
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetMonDom4Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetMonDom4
     spectrum on
 
         track chainMonDom4
         release alpha
         subTrack chainNetMonDom4Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain monDom4
 
     track chainNetMonDom4Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetMonDom4
 
         track netMonDom4
         release alpha
         subTrack chainNetMonDom4Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign monDom4 chainMonDom4
 
 track chainNetMonDom5
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 191
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb monDom5
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetMonDom5Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetMonDom5
     spectrum on
 
         track chainMonDom5
         subTrack chainNetMonDom5Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain monDom5
 
     track chainNetMonDom5Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetMonDom5
 
         track netMonDom5
         subTrack chainNetMonDom5Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign monDom5 chainMonDom5
 
 track chainNetEriEur1
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 191
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb eriEur1
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetEriEur1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetEriEur1
     spectrum on
 
         track chainEriEur1
         subTrack chainNetEriEur1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain eriEur1
 
     track chainNetEriEur1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetEriEur1
 
         track netEriEur1
         subTrack chainNetEriEur1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign eriEur1 chainEriEur1
 
 track chainNetSorAra1
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 209
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb sorAra1
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetSorAra1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetSorAra1
     spectrum on
 
         track chainSorAra1
         subTrack chainNetSorAra1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain sorAra1
 
     track chainNetSorAra1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetSorAra1
 
         track netSorAra1
         subTrack chainNetSorAra1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign sorAra1 chainSorAra1
 
 # release alpha until mm9 individual chain/net tracks phased out
 track chainNetMm9
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 209
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb mm9
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetMm9Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetMm9
     spectrum on
 
         track chainMm9
         release alpha
         subTrack chainNetMm9Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain mm9
 
     track chainNetMm9Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetMm9
 
         track netMm9
         release alpha
         subTrack chainNetMm9Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign mm9 chainMm9
 
 # release alpha until mm8 individual chain/net tracks phased out
 track chainNetMm8
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 209
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb mm8
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetMm8Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetMm8
     spectrum on
 
         track chainMm8
         release alpha
         subTrack chainNetMm8Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain mm8
 
     track chainNetMm8Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetMm8
 
         track netMm8
         release alpha
         subTrack chainNetMm8Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign mm8 chainMm8
 
 # release alpha until mm7 individual chain/net tracks phased out
 track chainNetMm7
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 209
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb mm7
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetMm7Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetMm7
     spectrum on
 
         track chainMm7
         release alpha
         subTrack chainNetMm7Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain mm7
 
     track chainNetMm7Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetMm7
 
         track netMm7
         release alpha
         subTrack chainNetMm7Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign mm7 chainMm7
 
 # release alpha until mm6 individual chain/net tracks phased out
 track chainNetMm6
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 209
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb mm6
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetMm6Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetMm6
     spectrum on
 
         track chainMm6
         release alpha
         subTrack chainNetMm6Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain mm6
 
     track chainNetMm6Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetMm6
 
         track netMm6
         release alpha
         subTrack chainNetMm6Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign mm6 chainMm6
 
 track chainNetMm5
+release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 visibilityViewDefaults chain=pack net=dense
 group compGeno
 noInherit on
 priority 209
 color 0,0,0
 altColor 255,255,0
 type bed 3
 settingsByView chain:spectrum=on
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb mm5
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainMm5
+    release alpha
     subTrack chainNetMm5
     subGroups view=chain
     shortLabel $o_Organism Chain
     longLabel $o_Organism ($o_date/$o_db) Chained Alignments
     type chain mm5
 
     track netMm5
+    release alpha
     subTrack chainNetMm5
     subGroups view=net
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign mm5 chainMm5
 
 # release alpha until rn4 individual chain/net tracks phased out
 track chainNetRn4
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 209
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb rn4
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetRn4Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetRn4
     spectrum on
 
         track chainRn4
         release alpha
         subTrack chainNetRn4Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain rn4
 
     track chainNetRn4Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetRn4
 
         track netRn4
         release alpha
         subTrack chainNetRn4Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign rn4 chainRn4
 
 # release alpha until rn3 individual chain/net tracks phased out
 track chainNetRn3
 release alpha
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 209
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb rn3
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetRn3Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetRn3
     spectrum on
 
         track chainRn3
         release alpha
         subTrack chainNetRn3Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain rn3
 
     track chainNetRn3Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetRn3
 
         track netRn3
         release alpha
         subTrack chainNetRn3Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign rn3 chainRn3
 
 # release alpha until cavPor3 individual chain/net tracks phased out
 track chainNetCavPor3
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 209
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb cavPor3
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetCavPor3Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetCavPor3
     spectrum on
 
         track chainCavPor3
         release alpha
         subTrack chainNetCavPor3Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain cavPor3
 
     track chainNetCavPor3Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetCavPor3
 
         track netCavPor3
         release alpha
         subTrack chainNetCavPor3Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign cavPor3 chainCavPor3
 
 # release alpha until cavPor2 individual chain/net tracks phased out
 track chainNetCavPor2
 release alpha
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 209
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb cavPor2
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetCavPor2Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetCavPor2
     spectrum on
 
         track chainCavPor2
         release alpha
         subTrack chainNetCavPor2Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain cavPor2
 
     track chainNetCavPor2Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetCavPor2
 
         track netCavPor2
         release alpha
         subTrack chainNetCavPor2Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign cavPor2 chainCavPor2
 
 track chainNetOryCun2
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 209
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb oryCun2
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetOryCun2Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetOryCun2
     spectrum on
 
         track chainOryCun2
         subTrack chainNetOryCun2Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain oryCun2
 
     track chainNetOryCun2Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetOryCun2
 
         track netOryCun2
         subTrack chainNetOryCun2Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign oryCun2 chainOryCun2
 
 track chainNetOryCun1
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 209
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb oryCun1
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetOryCun1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetOryCun1
     spectrum on
 
         track chainOryCun1
         subTrack chainNetOryCun1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain oryCun1
 
     track chainNetOryCun1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetOryCun1
 
         track netOryCun1
         subTrack chainNetOryCun1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign oryCun1 chainOryCun1
 
 track chainNetEquCab2
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 240
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb equCab2
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetEquCab2Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetEquCab2
     spectrum on
 
         track chainEquCab2
         subTrack chainNetEquCab2Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain equCab2
 
     track chainNetEquCab2Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetEquCab2
 
         track netEquCab2
         subTrack chainNetEquCab2Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign equCab2 chainEquCab2
 
 track chainNetEquCab1
 release alpha
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 240
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb equCab1
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetEquCab1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetEquCab1
     spectrum on
 
         track chainEquCab1
         release alpha
         subTrack chainNetEquCab1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain equCab1
 
     track chainNetEquCab1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetEquCab1
 
         track netEquCab1
         release alpha
         subTrack chainNetEquCab1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign equCab1 chainEquCab1
 
 track chainNetEchTel1
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 240
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb echTel1
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetEchTel1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetEchTel1
     spectrum on
 
         track chainEchTel1
         subTrack chainNetEchTel1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain echTel1
 
     track chainNetEchTel1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetEchTel1
 
         track netEchTel1
         subTrack chainNetEchTel1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign echTel1 chainEchTel1
 
 track chainNetDasNov2
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 240
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb dasNov2
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetDasNov2Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetDasNov2
     spectrum on
 
         track chainDasNov2
         subTrack chainNetDasNov2Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain dasNov2
 
     track chainNetDasNov2Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetDasNov2
 
         track netDasNov2
         subTrack chainNetDasNov2Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign dasNov2 chainDasNov2
 
 track chainNetDasNov1
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 240
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb dasNov1
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetDasNov1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetDasNov1
     spectrum on
 
         track chainDasNov1
         subTrack chainNetDasNov1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain dasNov1
 
     track chainNetDasNov1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetDasNov1
 
         track netDasNov1
         subTrack chainNetDasNov1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign dasNov1 chainDasNov1
 
 # release alpha until bosTau4 individual tracks phased out
 track chainNetBosTau4
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 240
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb bosTau4
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetBosTau4Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetBosTau4
     spectrum on
 
         track chainBosTau4
         release alpha
         subTrack chainNetBosTau4Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain bosTau4
 
     track chainNetBosTau4Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetBosTau4
 
         track netBosTau4
         release alpha
         subTrack chainNetBosTau4Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign bosTau4 chainBosTau4
 
 # release alpha until bosTau3 individual tracks phased out
 track chainNetBosTau3
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 240
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb bosTau3
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetBosTau3Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetBosTau3
     spectrum on
 
         track chainBosTau3
         release alpha
         subTrack chainNetBosTau3Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain bosTau3
 
     track chainNetBosTau3Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetBosTau3
 
         track netBosTau3
         release alpha
         subTrack chainNetBosTau3Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign bosTau3 chainBosTau3
 
 # release alpha until bosTau2 individual tracks phased out
 track chainNetBosTau2
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 240
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb bosTau2
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetBosTau2Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetBosTau2
     spectrum on
 
         track chainBosTau2
         release alpha
         subTrack chainNetBosTau2Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain bosTau2
 
     track chainNetBosTau2Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetBosTau2
 
         track netBosTau2
         release alpha
         subTrack chainNetBosTau2Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign bosTau2 chainBosTau2
 
 track chainNetBosTau1
 compositeTrack on
 shortLabel $o_db Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 240
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb bosTau1
 chainMinScore 1000
 chainLinearGap loose
 spectrum on
 html chainNet
 
     track chainNetBosTau1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetBosTau1
     spectrum on
 
         track chainBosTau1
         subTrack chainNetBosTau1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain bosTau1
 
     track chainNetBosTau1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetBosTau1
 
         track netBosTau1
         subTrack chainNetBosTau1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign bosTau1 chainBosTau1
 
 # release alpha until canFam2 individual tracks phased out
 track chainNetCanFam2
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 240
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb canFam2
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetCanFam2Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetCanFam2
     spectrum on
 
         track chainCanFam2
         release alpha
         subTrack chainNetCanFam2Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain canFam2
 
     track chainNetCanFam2Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetCanFam2
 
         track netCanFam2
         release alpha
         subTrack chainNetCanFam2Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign canFam2 chainCanFam2
 
 # release alpha until felCat3 individual tracks phased out
 track chainNetFelCat3
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 240
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb felCat3
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetFelCat3Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetFelCat3
     spectrum on
 
         track chainFelCat3
         release alpha
         subTrack chainNetFelCat3Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain felCat3
 
     track chainNetFelCat3Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetFelCat3
 
         track netFelCat3
         release alpha
         subTrack chainNetFelCat3Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign felCat3 chainFelCat3
 
 track chainNetVenter
 compositeTrack on
 shortLabel Venter Chain/Net
 longLabel J. Craig Venter Chain and Net Alignments
 subGroup1 view Views chain=Chains net=Nets
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 500
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 
     track chainNetVenterViewchain
     shortLabel Chains
     view chain
     visibility pack
     subTrack chainNetVenter
     spectrum on
 
         track chainVenter1
         subTrack chainNetVenterViewchain off
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         color 100,50,0
         altColor 255,240,200
         matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
         matrixHeader A, C, G, T
         type chain venter1
         otherDb venter1
 
     track chainNetVenterViewnet
     shortLabel Nets
     view net
     visibility dense
     subTrack chainNetVenter
 
         track netVenter1
         subTrack chainNetVenterViewnet off
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign venter1 chainVenter1
         otherDb venter1
 
 track chainNetHg18
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 498
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
 matrixHeader A, C, G, T
 otherDb hg18
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainNetHg18Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetHg18
     spectrum on
 
         track chainHg18
         release alpha
         subTrack chainNetHg18Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain hg18
 
     track chainNetHg18Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetHg18
 
         track netHg18
         release alpha
         subTrack chainNetHg18Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment net
         type netAlign hg18 chainHg18
 
 track chainNetHg19
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 498
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
 matrixHeader A, C, G, T
 otherDb hg19
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainNetHg19Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetHg19
     spectrum on
 
         track chainHg19
         subTrack chainNetHg19Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain hg19
 
     track chainNetHg19Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetHg19
 
         track netHg19
         subTrack chainNetHg19Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment net
         type netAlign hg19 chainHg19
 
 track chainNetHg17
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 498
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb hg17
 chainMinScore 1000
 chainLinearGap loose
 html chainNet
 
     track chainNetHg17Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetHg17
     spectrum on
 
         track chainHg17
         release alpha
         subTrack chainNetHg17Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain hg17
 
     track chainNetHg17Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetHg17
 
         track netHg17
         release alpha
         subTrack chainNetHg17Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment net
         type netAlign hg17 chainHg17
 
 track chainNetPanTro2
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 498
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
 matrixHeader A, C, G, T
 otherDb panTro2
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainNetPanTro2Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetPanTro2
     spectrum on
 
         track chainPanTro2
         release alpha
         subTrack chainNetPanTro2Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain panTro2
 
     track chainNetPanTro2Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetPanTro2
 
         track netPanTro2
         release alpha
         subTrack chainNetPanTro2Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment net
         type netAlign panTro2 chainPanTro2
 
 track chainNetPanTro1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 498
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
 matrixHeader A, C, G, T
 otherDb panTro1
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainNetPanTro1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetPanTro1
     spectrum on
 
         track chainPanTro1
         release alpha
         subTrack chainNetPanTro1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain panTro1
 
     track chainNetPanTro1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetPanTro1
 
         track netPanTro1
         release alpha
         subTrack chainNetPanTro1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment net
         type netAlign panTro1 chainPanTro1
 
 track chainNetGorGor1
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 498
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb gorGor1
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainNetGorGor1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetGorGor1
     spectrum on
 
         track chainGorGor1
         subTrack chainNetGorGor1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain gorGor1
 
     track chainNetGorGor1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetGorGor1
 
         track netGorGor1
         subTrack chainNetGorGor1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment net
         type netAlign gorGor1 chainGorGor1
 
 track chainNetPonAbe2
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 498
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
 matrixHeader A, C, G, T
 otherDb ponAbe2
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainNetPonAbe2Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetPonAbe2
     spectrum on
 
         track chainPonAbe2
         release alpha
         subTrack chainNetPonAbe2Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain ponAbe2
 
     track chainNetPonAbe2Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetPonAbe2
 
         track netPonAbe2
         release alpha
         subTrack chainNetPonAbe2Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment net
         type netAlign ponAbe2 chainPonAbe2
 
 track chainNetTupBel1
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 498
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb tupBel1
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainNetTupBel1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetTupBel1
     spectrum on
 
         track chainTupBel1
         subTrack chainNetTupBel1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain tupBel1
 
     track chainNetTupBel1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetTupBel1
 
         track netTupBel1
         subTrack chainNetTupBel1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment net
         type netAlign tupBel1 chainTupBel1
 
 track chainNetOtoGar1
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 498
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb otoGar1
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainNetOtoGar1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetOtoGar1
     spectrum on
 
         track chainOtoGar1
         subTrack chainNetOtoGar1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain otoGar1
 
     track chainNetOtoGar1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetOtoGar1
 
         track netOtoGar1
         subTrack chainNetOtoGar1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment net
         type netAlign otoGar1 chainOtoGar1
 
 track chainNetCalJac1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 498
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb calJac1
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainNetCalJac1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetCalJac1
     spectrum on
 
         track chainCalJac1
         release alpha
         subTrack chainNetCalJac1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain calJac1
 
     track chainNetCalJac1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetCalJac1
 
         track netCalJac1
         release alpha
         subTrack chainNetCalJac1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment net
         type netAlign calJac1 chainCalJac1
 
 track chainNetRheMac2
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 498
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb rheMac2
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainNetRheMac2Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetRheMac2
     spectrum on
 
         track chainRheMac2
         release alpha
         subTrack chainNetRheMac2Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain rheMac2
 
     track chainNetRheMac2Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetRheMac2
 
         track netRheMac2
         release alpha
         subTrack chainNetRheMac2Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment net
         type netAlign rheMac2 chainRheMac2
 
 track chainNetRheMac1
 release alpha
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 498
 color 100,50,0
 altColor 255,240,200
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb rheMac1
 chainMinScore 3000
 chainLinearGap medium
 html chainNet
 
     track chainNetRheMac1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     subTrack chainNetRheMac1
     spectrum on
 
         track chainRheMac1
         release alpha
         subTrack chainNetRheMac1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         type chain rheMac1
 
     track chainNetRheMac1Viewnet
     shortLabel Net
     view net
     visibility dense
     subTrack chainNetRheMac1
 
         track netRheMac1
         release alpha
         subTrack chainNetRheMac1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment net
         type netAlign rheMac1 chainRheMac1
 
 track chainNetPoodle
 compositeTrack on
 shortLabel Poodle Chain/Net
 longLabel Poodle Chain and Net Alignments
 subGroup1 view Views chain=Chains net=Nets
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 500
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 
     track chainNetPoodleViewchain
     shortLabel Chains
     view chain
     visibility pack
     subTrack chainNetPoodle
     spectrum on
 
         track chainCanFamPoodle1
         subTrack chainNetPoodleViewchain off
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date/$o_db) Chained Alignments
         color 100,50,0
         altColor 255,240,200
         matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
         matrixHeader A, C, G, T
         type chain canFamPoodle1
         otherDb canFamPoodle1
 
     track chainNetPoodleViewnet
     shortLabel Nets
     view net
     visibility dense
     subTrack chainNetPoodle
 
         track netCanFamPoodle1
         subTrack chainNetPoodleViewnet off
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date/$o_db) Alignment Net
         type netAlign canFamPoodle1 chainCanFamPoodle1
         otherDb canFamPoodle1
 

