src/hg/tcga/pBamBam/makefile 1.1
1.1 2009/12/20 22:17:35 jsanborn
initial commit
Index: src/hg/tcga/pBamBam/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/tcga/pBamBam/makefile,v
retrieving revision 1.2
retrieving revision 1.1
diff -b -B -U 1000000 -r1.2 -r1.1
--- src/hg/tcga/pBamBam/makefile 20 Dec 2009 22:27:22 -0000 1.2
+++ src/hg/tcga/pBamBam/makefile 20 Dec 2009 22:17:35 -0000 1.1
@@ -1,34 +1,25 @@
USE_BAM = 1
include ../../../inc/common.mk
# libbam, will need to change SAMDIR to where it is on your system
SAMDIR = /cluster/home/jsanborn/samtools
SAMINC = ${SAMDIR}
SAMLIB = ${SAMDIR}/libbam.a
L += $(MYSQLLIBS) -lm
MYLIBDIR = ../../../lib/${MACHTYPE}
MYLIBS = $(MYLIBDIR)/jkhgap.a ${MYLIBDIR}/jkweb.a
-A1 = pBamBam
-O1 = pBamBam.o bam_helper.o
+A = pBamBamCNV
+O = pBamBamCNV.o bam_helper.o
-A2 = pBamBamCNV
-O2 = pBamBamCNV.o bam_helper.o
+pBamBamCNV: ${O} ${MYLIBS}
+ ${CC} ${COPT} -o ${DESTDIR}${BINDIR}/${A}${EXE} ${O} ${MYLIBS} $L
+ ${STRIP} ${DESTDIR}${BINDIR}/${A}${EXE}
-pBamBam: ${O1} ${MYLIBS}
- ${CC} ${COPT} -o ${DESTDIR}${BINDIR}/${A1}${EXE} ${O1} ${MYLIBS} $L
- ${STRIP} ${DESTDIR}${BINDIR}/${A1}${EXE}
-
-pBamBamCNV: ${O2} ${MYLIBS}
- ${CC} ${COPT} -o ${DESTDIR}${BINDIR}/${A2}${EXE} ${O2} ${MYLIBS} $L
- ${STRIP} ${DESTDIR}${BINDIR}/${A2}${EXE}
-
-compile:: ${O1} ${O2}
- ${CC} ${COPT} -o ${A1}${EXE} ${O1} ${MYLIBS} $L
- ${CC} ${COPT} -o ${A2}${EXE} ${O2} ${MYLIBS} $L
+compile:: ${O}
+ ${CC} ${COPT} -o ${A}${EXE} ${O} ${MYLIBS} $L
clean::
- rm -f ${A1} ${O1}
- rm -f ${A2} ${O2}
+ rm -f ${A} ${O}