katrina: changes by file

branch to review (2009-12-14 to 2010-01-04) v222

• src/hg/makeDb/schema/all.joiner
  • 1.755 lines changed: 1, context: html, text, full: html, text
    added danRer6 as a database covered by xrg variable; danRer6 is first danRer db to have xenoRefGene
  • 1.754 lines changed: 2, context: html, text, full: html, text
    moved danRer6 from '#transMapDb not public...' to a database covered by transMapDb variable
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.725 lines changed: 36, context: html, text, full: html, text
    removed release alpha lines for ENCODE CSHL Sm RNA
• src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlShortRnaSeq.html
  • 1.3 lines changed: 5, context: html, text, full: html, text
    correcting minor errors
• src/hg/makeDb/trackDb/mouse/trackDb.ra
  • 1.171 lines changed: 1, context: html, text, full: html, text
    revised termRegex in komp table search block so that searches of komp.name work
• src/hg/makeDb/trackDb/zebrafish/trackDb.ra
  • 1.58 lines changed: 1, context: html, text, full: html, text
    fixed termRegex of search block for gold so that searching on danRer6 works and so all danRer assemblies now pick up the chrM contig (they were not before)