markd: changes by file

branch to review (2009-12-14 to 2010-01-04) v222

• src/hg/das/das.c
  • 1.46 lines changed: 1, context: html, text, full: html, text
    change content-type for DAS results to text/xml
• src/hg/hgTracks/bamTrack.c
  • 1.21 lines changed: 2, context: html, text, full: html, text
    remove fixed length restrion on size of item names. reduce per-item memory usage by removing unusaed array
• src/hg/hgTracks/bedTrack.c
  • 1.21 lines changed: 1, context: html, text, full: html, text
    remove fixed length restrion on size of item names. reduce per-item memory usage by removing unusaed array
• src/hg/hgTracks/cgapSageTrack.c
  • 1.14 lines changed: 5, context: html, text, full: html, text
    remove fixed length restrion on size of item names. reduce per-item memory usage by removing unusaed array
• src/hg/hgTracks/chainTrack.c
  • 1.38 lines changed: 5, context: html, text, full: html, text
    remove fixed length restrion on size of item names. reduce per-item memory usage by removing unusaed array
• src/hg/hgTracks/encode.c
  • 1.23 lines changed: 1, context: html, text, full: html, text
    remove fixed length restrion on size of item names. reduce per-item memory usage by removing unusaed array
• src/hg/hgTracks/hgTracks.c
  • 1.1616 lines changed: 2, context: html, text, full: html, text
    remove fixed length restrion on size of item names. reduce per-item memory usage by removing unusaed array
• src/hg/hgTracks/hgTracks.h
  • 1.194 lines changed: 2, context: html, text, full: html, text
    remove fixed length restrion on size of item names. reduce per-item memory usage by removing unusaed array
• src/hg/hgTracks/loweLabTracks.c
  • 1.31 lines changed: 2, context: html, text, full: html, text
    remove fixed length restrion on size of item names. reduce per-item memory usage by removing unusaed array
• src/hg/hgTracks/pslTrack.c
  • 1.33 lines changed: 4, context: html, text, full: html, text
    remove fixed length restrion on size of item names. reduce per-item memory usage by removing unusaed array
• src/hg/hgTracks/retroGene.c
  • 1.18 lines changed: 1, context: html, text, full: html, text
    remove fixed length restrion on size of item names. reduce per-item memory usage by removing unusaed array
• src/hg/hgTracks/sampleTracks.c
  • 1.9 lines changed: 1, context: html, text, full: html, text
    remove fixed length restrion on size of item names. reduce per-item memory usage by removing unusaed array
• src/hg/hgTracks/simpleTracks.c
  • 1.117 lines changed: 7, context: html, text, full: html, text
    remove fixed length restrion on size of item names. reduce per-item memory usage by removing unusaed array
• src/hg/hgTracks/switchGear.c
  • 1.6 lines changed: 1, context: html, text, full: html, text
    remove fixed length restrion on size of item names. reduce per-item memory usage by removing unusaed array
• src/hg/makeDb/doc/danRer6.txt
  • 1.14 lines changed: 8, context: html, text, full: html, text
    added transmap build doc
• src/hg/makeDb/genbank/doc/to-do.txt
  • 1.119 lines changed: 2, context: html, text, full: html, text
    added problem case example
• src/hg/makeDb/genbank/etc/align.dbs
  • 1.107 lines changed: 1, context: html, text, full: html, text
    don't align dropped database
  • 1.106 lines changed: 6, context: html, text, full: html, text
    don't align for genomes no longer being updated
  • 1.105 lines changed: 11, context: html, text, full: html, text
    put database update lists in alphabetical order to make comparisons easy
  • 1.104 lines changed: 1, context: html, text, full: html, text
    added panda
• src/hg/makeDb/genbank/etc/genbank.conf
  • 1.355 lines changed: 3, context: html, text, full: html, text
    changed panda params
• src/hg/makeDb/genbank/etc/hgwbeta.dbs
  • 1.103 lines changed: 2, context: html, text, full: html, text
    sort to make finding differences easy
  • 1.102 lines changed: 2, context: html, text, full: html, text
    put database update lists in alphabetical order to make comparisons easy
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • 1.111 lines changed: 1, context: html, text, full: html, text
    don't update danRer1
  • 1.110 lines changed: 16, context: html, text, full: html, text
    put database update lists in alphabetical order to make comparisons easy
  • 1.109 lines changed: 5, context: html, text, full: html, text
    added panda
• src/hg/makeDb/genbank/etc/rr.dbs
  • 1.85 lines changed: 1, context: html, text, full: html, text
    don't align dropped database
  • 1.84 lines changed: 10, context: html, text, full: html, text
    put database update lists in alphabetical order to make comparisons easy
• src/hg/makeDb/genbank/src/extFileUpdate/extFileTool
  • 1.10 lines changed: 1, context: html, text, full: html, text
    fix path for hgnfs1 (fixed premature commit)
  • 1.9 lines changed: 2, context: html, text, full: html, text
    modified extFile updating to match new server configuration
  • 1.8 lines changed: 41, context: html, text, full: html, text
    modified extFile updating to match new server configuration
• src/hg/makeDb/genbank/src/extFileUpdate/extFileUpdate.c
  • 1.13 lines changed: 42, context: html, text, full: html, text
    modified extFile updating to match new server configuration
• src/hg/makeDb/trackDb/chicken/galGal3/caCondor454.html
  • 1.3 lines changed: 1, context: html, text, full: html, text
    added credit
• src/hg/trfBig/trfBig.c
  • 1.20 lines changed: 6, context: html, text, full: html, text
    forgot check for fork failure
  • 1.19 lines changed: 14, context: html, text, full: html, text
    integrated change from stanford to no print out a error message when trf actually succeeded
• src/inc/common.h
  • 1.165 lines changed: 3, context: html, text, full: html, text
    correctly check return status of system; removed confusing function that is no longer used
• src/lib/common.c
  • 1.142 lines changed: 22, context: html, text, full: html, text
    correctly check return status of system; removed confusing function that is no longer used
• src/utils/qa/weeklybld/cvs-reports-d
  • 1.13 lines changed: 39, context: html, text, full: html, text
    changes to support diff of what happend on a branch