tdreszer: changes by file

branch to review (2009-12-14 to 2010-01-04) v222

• src/hg/encode/DAFs/HAIBChIPseq.daf
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Fix my mistake in 'variables' line
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • 1.209 lines changed: 8, context: html, text, full: html, text
    Special case code for cleaning up tablenames that are too long
  • 1.208 lines changed: 114, context: html, text, full: html, text
    Simplified controlled vocab validation, tableNames based on cv tags not terms, tag 'None' not included in naem, special case replicate subGroup
• src/hg/encode/encodeValidate/config/cv.ra
  • 1.166 lines changed: 154, context: html, text, full: html, text
    Added 14 new tier 3 cell lines for Snyder and Stam labs
  • 1.159 lines changed: 2, context: html, text, full: html, text
    Fix BTO term for myotubes
  • 1.158 lines changed: 49, context: html, text, full: html, text
    Added 2 cell types for Broad
  • 1.157 lines changed: 8, context: html, text, full: html, text
    Shortened more tags because tableNames and sorting
  • 1.156 lines changed: 3, context: html, text, full: html, text
    Shortened some tags because tableNames are over-flowing
• src/hg/encode/validateFiles/validateFiles.c
  • 1.34 lines changed: 21, context: html, text, full: html, text
    Added 'privateData' option and require tab delimit instead of white space delimit
  • 1.33 lines changed: 14, context: html, text, full: html, text
    Never do in 1 checkin what can be spread out into 2
  • 1.32 lines changed: 5, context: html, text, full: html, text
    Exception for chrM should not be an option. If end > chromSize and chrM, then make sure start <= chromSize
• src/hg/hgTracks/imageV2.c
  • 1.19 lines changed: 1, context: html, text, full: html, text
    Changed verbose messages from js developers only to hgwdev only
  • 1.18 lines changed: 6, context: html, text, full: html, text
    Warning only for javascriipt developers
• src/hg/js/README
  • 1.1 lines changed: 0, context: html, text, full: html, text
    Need this to note the obscure hg.conf setting required to test changes
• src/hg/makeDb/doc/encodeDccHg18/broadChipSeq.notes.txt
  • 1.9 lines changed: 287, context: html, text, full: html, text
    Fix captitaliZation in paths
  • 1.8 lines changed: 51, context: html, text, full: html, text
    Kayla found some mangled names
• src/hg/makeDb/doc/encodeDccHg18/uwDnaseSeq.release2.notes.txt
  • 1.1 lines changed: 0, context: html, text, full: html, text
    Notes for the 2nd release of UW DNase
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.730 lines changed: 1, context: html, text, full: html, text
    Fix dataVersion on Broad during the 13th hour
  • 1.728 lines changed: 1, context: html, text, full: html, text
    Fix UW ChipSeq settings
  • 1.726 lines changed: 264, context: html, text, full: html, text
    Broads 14 for Jan 2010
  • 1.722 lines changed: 151, context: html, text, full: html, text
    Added 4 more HAIB ChIP submissions
• src/hg/utils/automation/Encode.pm
  • 1.53 lines changed: 2, context: html, text, full: html, text
    Plug up a runtime warning warning