src/hg/instinct/extractData/extractData.c 1.6

Index: src/hg/instinct/extractData/extractData.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/instinct/extractData/extractData.c,v
retrieving revision 1.5
retrieving revision 1.6
diff -b -B -U 4 -r1.5 -r1.6
--- src/hg/instinct/extractData/extractData.c	14 Jan 2010 23:15:04 -0000	1.5
+++ src/hg/instinct/extractData/extractData.c	14 Jan 2010 23:33:14 -0000	1.6
@@ -27,8 +27,20 @@
   "options:\n"
   "   -median       Output median value if multiple probes\n"
   "   -tcga         Handle TCGA ids, keeps only first 16 chars in sample_id\n"
   "   -samples=STR  Sample comma-separated list, otherwise all sample data are returned.\n"
+  "examples:\n"
+  "* Single sample / Single gene / All probes:\n"
+  "  ./extractData -tcga -samples=TCGA-06-0145-01A harvardCGH egfr\n"
+  "\n"
+  "* Multiple samples / Single gene /Median-value of probes:\n"
+  "  ./extractData -tcga -median -samples=TCGA-06-0145-01A,TCGA-06-0145-10A harvardCGH egfr\n"
+  "\n"
+  "* All samples / multiple genes / All probes of all genes:\n"
+  "  ./extractData harvardCGH egfr,erbb2,esr1\n"
+  "\n"
+  "* All samples / multiple genes / Median-value of probes:\n"
+  "  ./extractData harvardCGH egfr,erbb2,esr1\n"
   );
 }
 
 #define TCGA_PATIENT_PREFIX 12