src/hg/makeDb/doc/mm9.txt 1.120

Index: src/hg/makeDb/doc/mm9.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/mm9.txt,v
retrieving revision 1.119
retrieving revision 1.120
diff -b -B -U 4 -r1.119 -r1.120
--- src/hg/makeDb/doc/mm9.txt	6 Jan 2010 21:59:18 -0000	1.119
+++ src/hg/makeDb/doc/mm9.txt	15 Jan 2010 23:49:38 -0000	1.120
@@ -9892,4 +9892,23 @@
     #   73444297 bases of 2620346127 (2.803%) in intersection
 
 
 #######################################################################
+# Vega gene update (DONE - 2010-01-15 - Hiram)
+    #	lookup version number at the Vega WEB site:
+    #	http://vega.sanger.ac.uk/index.html
+    #	and FTP site:
+    #	ftp://ftp.sanger.ac.uk/pub/vega/
+    cd /hive/data/genomes/mm9
+    #	step wise to verify operation
+    doEnsGeneUpdate.pl -vegaGene -ensVersion=37 -stop=download mm9.ensGene.ra
+    doEnsGeneUpdate.pl -vegaGene -ensVersion=37 \
+	-continue=process -stop=process mm9.ensGene.ra
+    doEnsGeneUpdate.pl -vegaGene -ensVersion=37 \
+	-continue=load -stop=load mm9.ensGene.ra
+    doEnsGeneUpdate.pl -vegaGene -ensVersion=37 \
+	-continue=cleanup mm9.ensGene.ra
+    featureBits mm9 vegaGene
+    # 53838752 bases of 2620346127 (2.055%) in intersection
+    featureBits mm9 vegaPseudoGene
+    # 3060300 bases of 2620346127 (0.117%) in intersection
+########################################################################