src/hg/makeDb/doc/sacCer2.txt 1.15

Index: src/hg/makeDb/doc/sacCer2.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/sacCer2.txt,v
retrieving revision 1.14
retrieving revision 1.15
diff -b -B -U 4 -r1.14 -r1.15
--- src/hg/makeDb/doc/sacCer2.txt	22 Jul 2009 17:35:50 -0000	1.14
+++ src/hg/makeDb/doc/sacCer2.txt	14 Jan 2010 22:10:58 -0000	1.15
@@ -1359,5 +1359,18 @@
     hgsql -e "alter table chrM_gold add index bin (bin);" sacCer2
     hgsql -e "alter table chrM_gold add index frag (frag(9));" sacCer2
     hgsql -e "alter table chrM_gap add index chromStart (chromStart);" sacCer2
     hgsql -e "alter table chrM_gap add index bin (bin);" sacCer2
+
 ############################################################################
+# LIFTOVER TO SacCer1 (DONE - 2010-01-14 - Hiram )
+    mkdir /hive/data/genomes/sacCer2/bed/blat.sacCer1.2010-01-14
+    cd /hive/data/genomes/sacCer2/bed/blat.sacCer1.2010-01-14
+    # -debug run to create run dir, preview scripts...
+    doSameSpeciesLiftOver.pl -debug sacCer2 sacCer1
+    # Real run:
+    time nice -n +19 doSameSpeciesLiftOver.pl -verbose=2 \
+	-bigClusterHub=pk -dbHost=hgwdev -workhorse=hgwdev \
+	 sacCer2 sacCer1 > do.log 2>&1
+    #	real    3m42.700s
+
+#############################################################################