src/hg/makeDb/trackDb/trackDb.ra 1.582

1.582 2010/01/19 05:57:36 kuhn
moved all bosTau4 chainNets to composite and dropped individual tracks. hg19, hg18, mm9, canFam2, ornAna1 are live on RR
Index: src/hg/makeDb/trackDb/trackDb.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.ra,v
retrieving revision 1.581
retrieving revision 1.582
diff -b -B -U 4 -r1.581 -r1.582
--- src/hg/makeDb/trackDb/trackDb.ra	19 Jan 2010 04:24:15 -0000	1.581
+++ src/hg/makeDb/trackDb/trackDb.ra	19 Jan 2010 05:57:36 -0000	1.582
@@ -2817,52 +2817,8 @@
 spectrum on
 type netAlign mm7 chainMm7
 otherDb mm7
 
-# release beta until composite chainNetBosTau4 track becomes the default
-track chainBosTau4
-release beta
-shortLabel $o_Organism Chain
-longLabel $o_Organism ($o_date/$o_db) Chained Alignments
-group compGeno
-priority 256.291
-visibility hide
-color 100,50,0
-altColor 255,240,200
-spectrum on
-chainMinScore 3000
-chainLinearGap medium
-matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
-matrixHeader A, C, G, T
-type chain bosTau4
-otherDb bosTau4
-
-track netBosTau4
-release beta
-shortLabel $o_Organism Net
-longLabel $o_Organism ($o_date/$o_db) Alignment Net
-group compGeno
-priority 256.292
-visibility hide
-spectrum on
-type netAlign bosTau4 chainBosTau4
-otherDb bosTau4
-
-track chainCanFam2
-release beta
-shortLabel $o_Organism Chain
-longLabel $o_Organism ($o_date/$o_db) Chained Alignments
-group compGeno
-priority 230 
-visibility hide
-color 100,50,0
-altColor 255,240,200
-spectrum on
-matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
-matrixHeader A, C, G, T
-type chain canFam2
-otherDb canFam2
-
 # release beta until composite chainNetFelCat3 track becomes the default
 track chainFelCat3
 release beta
 shortLabel $o_Organism Chain
@@ -2927,41 +2883,8 @@
 spectrum on
 type netAlign felCat3 chainFelCat3
 otherDb felCat3
 
-track netCanFam2
-release beta
-shortLabel $o_Organism Net
-longLabel $o_Organism ($o_date/$o_db) Alignment Net
-group compGeno
-priority 230.1
-visibility hide
-spectrum on
-type netAlign canFam2 chainCanFam2
-otherDb canFam2
-
-track chainCanFam1
-shortLabel $o_Organism Chain
-longLabel $o_Organism ($o_date/$o_db) Chained Alignments
-group compGeno
-priority 230
-visibility hide
-color 100,50,0
-altColor 255,240,200
-spectrum on
-type chain canFam1
-otherDb canFam1
-
-track netCanFam1
-shortLabel $o_Organism Net
-longLabel $o_Organism ($o_date/$o_db) Alignment Net
-group compGeno
-priority 230.1
-visibility hide
-spectrum on
-type netAlign canFam1 chainCanFam1
-otherDb canFam1
-
 # release beta until composite chainNetCavPor3 track becomes the default
 track chainCavPor3
 release beta
 shortLabel $o_Organism Chain