src/hg/blastToPsl/tests/makefile 1.21
1.21 2010/01/06 21:09:18 markd
fixed parsing where blastp wraps Identity line
Index: src/hg/blastToPsl/tests/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/blastToPsl/tests/makefile,v
retrieving revision 1.20
retrieving revision 1.21
diff -b -B -U 4 -r1.20 -r1.21
--- src/hg/blastToPsl/tests/makefile 12 Apr 2009 19:00:55 -0000 1.20
+++ src/hg/blastToPsl/tests/makefile 6 Jan 2010 21:09:18 -0000 1.21
@@ -7,9 +7,9 @@
test: protMrnaTest protDnaTest mrnaDnaTest mrnaDnaxTest \
blockBugTest identityBugTest protMrnaEval1Test protMrnaEval2Test \
longDbNameTest multiLineDescTest tblastxTest tblastnTest \
- blastpPsiTest psiNoHitsTest psiBadFormatTest
+ blastpPsiTest psiNoHitsTest psiBadFormatTest blastpPsiWrapTest
#tblastnDbFirstTest megaBlastTest
protMrnaTest: mkdirs
@@ -107,8 +107,15 @@
pslCheck -verbose=0 output/$@.psl
diff -u expected/$@.psl output/$@.psl
diff -u expected/$@.bscores output/$@.bscores
+# PSI-BLASTP with Identities line wrapping
+blastpPsiWrapTest: mkdirs
+ ${blastToPsl} -scores=output/$@.bscores input/blastpPsiWrap.blast output/$@.psl
+ pslCheck -verbose=0 output/$@.psl
+ diff -u expected/$@.psl output/$@.psl
+ diff -u expected/$@.bscores output/$@.bscores
+
# PSI-BLASTP with no hits
psiNoHitsTest: mkdirs
${blastToPsl} -scores=output/$@.bscores input/psiNoHits.blast output/$@.psl
diff -u expected/$@.psl output/$@.psl