src/hg/lib/simpleRepeat.sql 1.8

Index: src/hg/lib/simpleRepeat.sql
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/lib/simpleRepeat.sql,v
retrieving revision 1.7
retrieving revision 1.8
diff -b -B -U 1000000 -r1.7 -r1.8
--- src/hg/lib/simpleRepeat.sql	10 May 2007 00:00:51 -0000	1.7
+++ src/hg/lib/simpleRepeat.sql	12 Jan 2010 22:36:05 -0000	1.8
@@ -1,28 +1,28 @@
 # simpleRepeat.sql was originally generated by the autoSql program, which also 
 # generated simpleRepeat.c and simpleRepeat.h.  This creates the database representation of
 # an object which can be loaded and saved from RAM in a fairly 
 # automatic way.
 
 #Describes the Simple Tandem Repeats
 CREATE TABLE simpleRepeat (
     bin smallint unsigned not null,   # Bin for fast index
     chrom varchar(255) not null,	# Human chromosome or FPC contig
     chromStart int unsigned not null,	# Start position in chromosome
     chromEnd int unsigned not null,	# End position in chromosome
     name varchar(255) not null,	# Simple Repeats tag name
     period int unsigned not null,	# Length of repeat unit
     copyNum float not null,	# Mean number of copies of repeat
     consensusSize int unsigned not null,	# Length of consensus sequence
     perMatch int unsigned not null,	# Percentage Match
     perIndel int unsigned not null,	# Percentage Indel
-    score int unsigned not null,	# Score between  and .  Best is .
+    score int unsigned not null,	# Alignment Score = 2*match-7*mismatch-7*indel; minscore=50
     A int unsigned not null,	# Number of A's in repeat unit
     C int unsigned not null,	# Number of C's in repeat unit
     G int unsigned not null,	# Number of G's in repeat unit
     T int unsigned not null,	# Number of T's in repeat unit
     entropy float not null,	# Entropy
     sequence longblob not null,	# Sequence of repeat unit element
               #Indices
     INDEX(chrom(16),bin),
     INDEX(chrom(16),chromStart)
 );