src/hg/lib/tRNAs.sql 1.3
1.3 2010/01/07 02:54:51 pchan
add fields for GtRNAdb urls
Index: src/hg/lib/tRNAs.sql
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/lib/tRNAs.sql,v
retrieving revision 1.2
retrieving revision 1.3
diff -b -B -U 1000000 -r1.2 -r1.3
--- src/hg/lib/tRNAs.sql 1 Dec 2005 01:25:52 -0000 1.2
+++ src/hg/lib/tRNAs.sql 7 Jan 2010 02:54:51 -0000 1.3
@@ -1,21 +1,22 @@
# tRNAs.sql was originally generated by the autoSql program, which also
# generated tRNAs.c and tRNAs.h. This creates the database representation of
# an object which can be loaded and saved from RAM in a fairly
# automatic way.
#transfer RNA genes
CREATE TABLE tRNAs (
- bin int unsigned not null,
chrom varchar(255) not null, # chromosome
chromStart int unsigned not null, # Start position in chromosome
chromEnd int unsigned not null, # End position in chromosome
name varchar(255) not null, # transfer RNA gene name
score int unsigned not null, # Score from 900-1000. 1000 is best
strand char(1) not null, # Value should be + or -
aa varchar(255) not null, # Amino acid for the tRNA
ac varchar(255) not null, # Anticodon for the tRNA
intron varchar(255) not null, # Coordinates for intron
trnaScore float not null, # tRNAScanSE score
+ genomeUrl varchar(255) not null, # GtRNAdb genome summary URL
+ trnaUrl varchar(255) not null, # GtRNAdb tRNA alignment URL
#Indices
- PRIMARY KEY(name)
+ PRIMARY KEY(chrom, chromStart, chromEnd)
);