braney: changes by file

branch to review (2010-01-05 to 2010-01-12) v223

• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • 1.212 lines changed: 1, context: html, text, full: html, text
    check for table existence using tableExists instead of looking in trackDb
• src/hg/encode/encodeValidate/config/cv.ra
  • 1.173 lines changed: 16, context: html, text, full: html, text
    None for restrictionEnzyme. Some new readTypes
• src/hg/hgc/encodeClick.c
  • 1.11 lines changed: 5, context: html, text, full: html, text
    list all elements that satisfy the query criteria, not just the first one
• src/hg/makeDb/trackDb/tagTypes.tab
  • 1.6 lines changed: 1, context: html, text, full: html, text
    added subGroup7
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.753 lines changed: 58, context: html, text, full: html, text
    a bunch of UW Affy Exon tables, some HepG2 Caltech RNA-seq
  • 1.752 lines changed: 320, context: html, text, full: html, text
    change dimensions back for UwAffyExon
  • 1.751 lines changed: 11, context: html, text, full: html, text
    Uw Exons, change dimensions, add Skmc rep 2
  • 1.750 lines changed: 21, context: html, text, full: html, text
    HAIB methylSeq H1hESC submission 887
  • 1.749 lines changed: 42, context: html, text, full: html, text
    HAIB methyl seq HepG2 and HeLa-S3
  • 1.747 lines changed: 1, context: html, text, full: html, text
    remove release alpha from HudsonalphaRnaSeq composite header
  • 1.746 lines changed: 11, context: html, text, full: html, text
    change Caltech signals to use autoScale, per Georgi
  • 1.745 lines changed: 107, context: html, text, full: html, text
    add Myer's lab RNA-seq
  • 1.742 lines changed: 34, context: html, text, full: html, text
    Caltech HepG2 non-directional
  • 1.741 lines changed: 220, context: html, text, full: html, text
    calTech RNA-seq GM12878, K562 two replicates, directional
  • 1.739 lines changed: 564, context: html, text, full: html, text
    add Duke Affy Exon Array composite
• src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlShortRnaSeq.html
  • 1.4 lines changed: 3, context: html, text, full: html, text
    add some explanatory text