markd: changes by file

branch to review (2010-01-05 to 2010-01-12) v223

• src/hg/autoSql/autoSql.c
  • 1.39 lines changed: 6, context: html, text, full: html, text
    make tab file load functions for structs of type object
• src/hg/autoSql/tests/expected/doc2.c
  • 1.2 lines changed: 155, context: html, text, full: html, text
    make tab file load functions for structs of type object
• src/hg/autoSql/tests/expected/doc2.h
  • 1.2 lines changed: 48, context: html, text, full: html, text
    make tab file load functions for structs of type object
• src/hg/autoSql/tests/expected/hardTest.c
  • 1.10 lines changed: 49, context: html, text, full: html, text
    make tab file load functions for structs of type object
• src/hg/autoSql/tests/expected/hardTest.h
  • 1.4 lines changed: 16, context: html, text, full: html, text
    make tab file load functions for structs of type object
• src/hg/autoSql/tests/expected/mainTest.c
  • 1.7 lines changed: 171, context: html, text, full: html, text
    make tab file load functions for structs of type object
• src/hg/autoSql/tests/expected/mainTest.h
  • 1.3 lines changed: 48, context: html, text, full: html, text
    make tab file load functions for structs of type object
• src/hg/autoSql/tests/expected/newTest.c
  • 1.9 lines changed: 200, context: html, text, full: html, text
    make tab file load functions for structs of type object
• src/hg/autoSql/tests/expected/newTest.h
  • 1.4 lines changed: 48, context: html, text, full: html, text
    make tab file load functions for structs of type object
• src/hg/autoSql/tests/expected/polyTest.c
  • 1.7 lines changed: 50, context: html, text, full: html, text
    make tab file load functions for structs of type object
• src/hg/autoSql/tests/expected/polyTest.h
  • 1.3 lines changed: 16, context: html, text, full: html, text
    make tab file load functions for structs of type object
• src/hg/autoSql/tests/expected/simpleTest.c
  • 1.5 lines changed: 445, context: html, text, full: html, text
    make tab file load functions for structs of type object
• src/hg/autoSql/tests/expected/simpleTest.h
  • 1.2 lines changed: 128, context: html, text, full: html, text
    make tab file load functions for structs of type object
• src/hg/blastToPsl/tests/makefile
  • 1.21 lines changed: 8, context: html, text, full: html, text
    fixed parsing where blastp wraps Identity line
• src/hg/blastToPsl/tests/expected/blastpPsiWrapTest.bscores
  • 1.1 lines changed: 0, context: html, text, full: html, text
    fixed parsing where blastp wraps Identity line
• src/hg/blastToPsl/tests/expected/blastpPsiWrapTest.psl
  • 1.1 lines changed: 0, context: html, text, full: html, text
    fixed parsing where blastp wraps Identity line
• src/hg/blastToPsl/tests/input/blastpPsiWrap.blast
  • 1.1 lines changed: 0, context: html, text, full: html, text
    fixed parsing where blastp wraps Identity line
• src/hg/hgTracks/config.c
  • 1.88 lines changed: 19, context: html, text, full: html, text
    added configuration option for the width of the label area
• src/hg/hgTracks/cytoBandTrack.c
  • 1.13 lines changed: 1, context: html, text, full: html, text
    fixed use on incorrect variable that caused ideogram to be trancated when label width was increased
• src/hg/hgTracks/hgTracks.c
  • 1.1620 lines changed: 0, context: html, text, full: html, text
    fixed broken indentation
• src/hg/hgTracks/hgTracks.h
  • 1.196 lines changed: 2, context: html, text, full: html, text
    added configuration option for the width of the label area
• src/hg/hgTracks/simpleTracks.c
  • 1.119 lines changed: 15, context: html, text, full: html, text
    added configuration option for the width of the label area
• src/hg/makeDb/genbank/etc/genbank.conf
  • 1.356 lines changed: 2, context: html, text, full: html, text
    disable tetNig ESTs as there are not any
• src/hg/makeDb/genbank/etc/ignore.idx
  • 1.99 lines changed: 1, context: html, text, full: html, text
    added ignored entry
• src/inc/errabort.h
  • 1.13 lines changed: 5, context: html, text, full: html, text
    added horrible hack so it's possible to distinguish between warning and errors in the warn handler
• src/inc/log.h
  • 1.8 lines changed: 4, context: html, text, full: html, text
    added support for setting minimum priority to log
• src/lib/blastParse.c
  • 1.25 lines changed: 9, context: html, text, full: html, text
    fixed parsing where blastp wraps Identity line
• src/lib/errabort.c
  • 1.16 lines changed: 9, context: html, text, full: html, text
    added horrible hack so it's possible to distinguish between warning and errors in the warn handler
• src/lib/https.c
  • 1.3 lines changed: 1, context: html, text, full: html, text
    added include of common.c
• src/lib/log.c
  • 1.10 lines changed: 125, context: html, text, full: html, text
    added support for setting minimum priority to log
• src/parasol/version.doc
  • 1.46 lines changed: 12, context: html, text, full: html, text
    added change descriptions
• src/parasol/broadNode/broadNode.c
  • 1.17 lines changed: 2, context: html, text, full: html, text
    add option to set minimum log level, move some logging to debug
• src/parasol/inc/paraVersion.h
  • 1.11 lines changed: 1, context: html, text, full: html, text
    change version number
• src/parasol/para/para.c
  • 1.109 lines changed: 7, context: html, text, full: html, text
    remove trailing / and /. to fix common problem with -batch option when doing name completion
• src/parasol/paraHub/paraHub.c
  • 1.133 lines changed: 23, context: html, text, full: html, text
    add option to set minimum log level, move some logging to debug
• src/parasol/paraNode/paraNode.c
  • 1.83 lines changed: 12, context: html, text, full: html, text
    add option to set minimum log level, move some logging to debug
• src/parasol/paraNodeStart/paraNodeStart.c
  • 1.16 lines changed: 4, context: html, text, full: html, text
    add option to set minimum log level, move some logging to debug