Index: src/hg/inc/tRNAs.h
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/inc/tRNAs.h,v
retrieving revision 1.1
retrieving revision 1.2
diff -b -B -U 1000000 -r1.1 -r1.2
--- src/hg/inc/tRNAs.h	1 Dec 2005 22:58:38 -0000	1.1
+++ src/hg/inc/tRNAs.h	7 Jan 2010 02:54:08 -0000	1.2
@@ -1,70 +1,72 @@
 /* tRNAs.h was originally generated by the autoSql program, which also 
  * generated tRNAs.c and tRNAs.sql.  This header links the database and
  * the RAM representation of objects. */
 
 #ifndef TRNAS_H
 #define TRNAS_H
 
-#define TRNAS_NUM_COLS 10
+#define TRNAS_NUM_COLS 12
 
 struct tRNAs
 /* transfer RNA genes */
     {
     struct tRNAs *next;  /* Next in singly linked list. */
     char *chrom;	/* chromosome */
     unsigned chromStart;	/* Start position in chromosome */
     unsigned chromEnd;	/* End position in chromosome */
     char *name;	/* transfer RNA gene name */
     unsigned score;	/* Score from 900-1000.  1000 is best */
     char strand[2];	/* Value should be + or - */
     char *aa;	/* Amino acid for the tRNA */
     char *ac;	/* Anticodon for the tRNA */
     char *intron;	/* Coordinates for intron */
     float trnaScore;	/* tRNAScanSE score */
+    char *genomeUrl;	/* GtRNAdb genome summary URL */
+    char *trnaUrl;	/* GtRNAdb tRNA alignment URL */
     };
 
 void tRNAsStaticLoad(char **row, struct tRNAs *ret);
 /* Load a row from tRNAs table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct tRNAs *tRNAsLoad(char **row);
 /* Load a tRNAs from row fetched with select * from tRNAs
  * from database.  Dispose of this with tRNAsFree(). */
 
 struct tRNAs *tRNAsLoadAll(char *fileName);
 /* Load all tRNAs from whitespace-separated file.
  * Dispose of this with tRNAsFreeList(). */
 
 struct tRNAs *tRNAsLoadAllByChar(char *fileName, char chopper);
 /* Load all tRNAs from chopper separated file.
  * Dispose of this with tRNAsFreeList(). */
 
 #define tRNAsLoadAllByTab(a) tRNAsLoadAllByChar(a, '\t');
 /* Load all tRNAs from tab separated file.
  * Dispose of this with tRNAsFreeList(). */
 
 struct tRNAs *tRNAsCommaIn(char **pS, struct tRNAs *ret);
 /* Create a tRNAs out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new tRNAs */
 
 void tRNAsFree(struct tRNAs **pEl);
 /* Free a single dynamically allocated tRNAs such as created
  * with tRNAsLoad(). */
 
 void tRNAsFreeList(struct tRNAs **pList);
 /* Free a list of dynamically allocated tRNAs's */
 
 void tRNAsOutput(struct tRNAs *el, FILE *f, char sep, char lastSep);
 /* Print out tRNAs.  Separate fields with sep. Follow last field with lastSep. */
 
 #define tRNAsTabOut(el,f) tRNAsOutput(el,f,'\t','\n');
 /* Print out tRNAs as a line in a tab-separated file. */
 
 #define tRNAsCommaOut(el,f) tRNAsOutput(el,f,',',',');
 /* Print out tRNAs as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* TRNAS_H */
 

