src/hg/instinct/hgGeneset/hgStats.h 1.1

1.1 2010/01/28 22:59:07 jsanborn
added clustering
Index: src/hg/instinct/hgGeneset/hgStats.h
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/instinct/hgGeneset/hgStats.h,v
retrieving revision 1.2
retrieving revision 1.1
diff -b -B -U 4 -r1.2 -r1.1
--- src/hg/instinct/hgGeneset/hgStats.h	29 Jan 2010 00:34:07 -0000	1.2
+++ src/hg/instinct/hgGeneset/hgStats.h	28 Jan 2010 22:59:07 -0000	1.1
@@ -46,14 +46,12 @@
 
 void initializeRawData(int rows, int columns,
 		       struct rawData *rdList, struct mapSettings *settings,
 		       double **data, int **mask, double *arrayweight,
-		       double *geneorder, char **genename, 
-		       double *sampleorder, char **samplename);
+		       double *geneorder, char **genename);
 
-void clusterData(struct rawData *rdList, struct mapSettings *settings,
-		 char method, char metric, 
-		 struct slName **geneOrder, struct slName **sampleOrder);
+struct slName *clusterDataByGene(struct rawData *rdList, struct mapSettings *settings,
+				 char method, char metric);
     
 struct slName *clusterGeneSet(struct hash *geneHash, 
 			      struct slName *genes, char method, char metric);
 /* Set up data structures for cluster software, perform hierarchical clustering, and