src/hg/instinct/hgGeneset/hgStats.h 1.1
1.1 2010/01/28 22:59:07 jsanborn
added clustering
Index: src/hg/instinct/hgGeneset/hgStats.h
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/instinct/hgGeneset/hgStats.h,v
retrieving revision 1.2
retrieving revision 1.1
diff -b -B -U 4 -r1.2 -r1.1
--- src/hg/instinct/hgGeneset/hgStats.h 29 Jan 2010 00:34:07 -0000 1.2
+++ src/hg/instinct/hgGeneset/hgStats.h 28 Jan 2010 22:59:07 -0000 1.1
@@ -46,14 +46,12 @@
void initializeRawData(int rows, int columns,
struct rawData *rdList, struct mapSettings *settings,
double **data, int **mask, double *arrayweight,
- double *geneorder, char **genename,
- double *sampleorder, char **samplename);
+ double *geneorder, char **genename);
-void clusterData(struct rawData *rdList, struct mapSettings *settings,
- char method, char metric,
- struct slName **geneOrder, struct slName **sampleOrder);
+struct slName *clusterDataByGene(struct rawData *rdList, struct mapSettings *settings,
+ char method, char metric);
struct slName *clusterGeneSet(struct hash *geneHash,
struct slName *genes, char method, char metric);
/* Set up data structures for cluster software, perform hierarchical clustering, and