src/hg/overlapSelect/tests/makefile 1.35
1.35 2010/01/30 01:14:01 markd
allow specifying location of name when specifying column indices so that -statsOutput is useful
Index: src/hg/overlapSelect/tests/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/overlapSelect/tests/makefile,v
retrieving revision 1.34
retrieving revision 1.35
diff -b -B -U 4 -r1.34 -r1.35
--- src/hg/overlapSelect/tests/makefile 31 Jul 2009 19:51:29 -0000 1.34
+++ src/hg/overlapSelect/tests/makefile 30 Jan 2010 01:14:01 -0000 1.35
@@ -227,9 +227,9 @@
###
# select by column tests
###
-columnSelectTests: colSelect colExclude colSelectStrand
+columnSelectTests: colSelect colExclude colSelectStrand colStats
# select by column
colSelect: mkout
${OVERSEL} -selectCoordCols=1,2,3 -inCoordCols=3,4,5 \
@@ -247,8 +247,14 @@
${OVERSEL} -strand -selectCoordCols=1,2,3,4 -inCoordCols=3,4,5,6 \
input/gene.select input/gene.clusters output/$@.cluster
${DIFF} expected/$@.cluster output/$@.cluster
+# stats output, by column, including name, ignoring strand
+colStats: mkout
+ ${OVERSEL} -statsOutput -selectCoordCols=1,2,3,,0 -inCoordCols=3,4,5,,2 \
+ input/gene.select input/gene.clusters output/$@.cluster
+ ${DIFF} expected/$@.cluster output/$@.cluster
+
###
# CDS overlap tests
###
cdsOverlapTests: cdsOverlapCdsCds cdsOverlapCdsExon \