src/hg/overlapSelect/usage.txt 1.12

1.12 2010/01/30 01:14:00 markd
allow specifying location of name when specifying column indices so that -statsOutput is useful

Index: src/hg/overlapSelect/usage.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/overlapSelect/usage.txt,v
retrieving revision 1.11
retrieving revision 1.12
diff -b -B -U 4 -r1.11 -r1.12
--- src/hg/overlapSelect/usage.txt	14 Jan 2009 00:21:21 -0000	1.11
+++ src/hg/overlapSelect/usage.txt	30 Jan 2010 01:14:00 -0000	1.12
@@ -21,12 +21,11 @@
           chainq - chain file format, using query instead of target
   -selectCoordCols=spec - selectFile is tab-separate with coordinates
        as described by spec, which is one of:
             o chromCol - chrom in this column followed by start and end.
-            o chromCol,startCol,endCol - chrom, start, and end in specified
-              columns.
-            o chromCol,startCol,endCol,strandCol - chrom, start, end, and
-              strand in specified columns.
+            o chromCol,startCol,endCol,strandCol,name - chrom, start, end, and
+              strand in specified columns. Columns can be omitted from the end
+              or left empty to not specify.
           NOTE: column numbers are zero-based
   -selectCds - Use only CDS in the selectFile
   -selectRange - Use entire range instead of blocks from records in
           the selectFile.