src/hg/instinct/hgGeneset/hgGenesets.h 1.4

Index: src/hg/instinct/hgGeneset/hgGenesets.h
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/instinct/hgGeneset/hgGenesets.h,v
retrieving revision 1.3
retrieving revision 1.4
diff -b -B -U 1000000 -r1.3 -r1.4
--- src/hg/instinct/hgGeneset/hgGenesets.h	22 Jan 2010 05:11:28 -0000	1.3
+++ src/hg/instinct/hgGeneset/hgGenesets.h	28 Jan 2010 22:59:07 -0000	1.4
@@ -1,104 +1,105 @@
 /*  */
 
 #ifndef HGGENESETS_H
 #define HGGENESETS_H
 
 #define MAX_NUM_RESPONSE 100  // maximum number of objects in JSON response
 
 #include "cart.h"
 
 #define DEBUG 1
 #define VERSION "0.1"
 
 /*** Prefixes for variables in cart we don't share with other apps. ***/
 #define hghPrefix "hgg_"
 #define hghDo hghPrefix "do"
 
 #define hghTableName hghPrefix "tableName"
 
 /*** Our various cart variables. ***/
 #define hghHeatmap hghPrefix "heatmap"
 #define hghDataSet hghPrefix "dataset"
 #define hghDisplayType hghPrefix "display"
 #define hghGhName hghPrefix "ghName"
 #define hghMaxGapToFill hghPrefix "maxGapToFill"
 #define hghImageWidth hghPrefix "imageWidth"
 #define hghDataConfigPrefix hghPrefix "data_" 
 
 #define hghMode hghPrefix "mode"
 #define hghDatasetId hghPrefix "dataset"
 #define hghSampleIds hghPrefix "samples"
 #define hghFeatureIds hghPrefix "features"
 #define hghWidth hghPrefix "width"
 #define hghHeight hghPrefix "height"
-
+#define hghClusterMethod hghPrefix "cmethod"
+#define hghClusterMetric hghPrefix "cmetric"
 
 /** Commands from Javascript client **/
 
 #define bioIntPrefix "hgg_"
 
 /* Obtaining Heatmaps */
 #define bioIntMode bioIntPrefix "mode"
 #define bioIntFeature bioIntPrefix "feature"
 #define bioIntCohortId bioIntPrefix "cohort_id"
 #define bioIntAnalysisId bioIntPrefix "analysis_id"
 #define bioIntFeatureId bioIntPrefix "feature_id"
 #define bioIntFeatureName bioIntPrefix "feature_name"
 #define bioIntTakeTop bioIntPrefix "take_top"
 #define bioIntSourceName bioIntPrefix "source"
 
 #define DEFAULT_HEATMAP_WIDTH 500
 #define DEFAULT_HEATMAP_HEIGHT 500
 
 /* ---- Global variables declared in hgHeatmap.c */
 extern struct cart *cart;	/* This holds cgi and other variables between clicks. */
 
 struct rawData {
     struct rawData *next;
 
     int sample_id;
     int feature_id;
     double val;
     double conf;
 };
 
 struct mapSettings {
     double gain;
     double max_deviation;
 
     int width;
     int height;
 
     double x_scale;
     double y_scale;
 
     struct rgbColor *low;
     struct rgbColor *zero;
     struct rgbColor *high;
     struct rgbColor *missing;
 
     struct hash *x_index;
     struct hash *y_index;
 };
 
 struct hmPixel {
     struct hmPixel *next;
     int x;
     int y;
     int w;
     int h;
 
     double val;
     int count;
 };
 
 struct mapSettings *initMapSettings(struct slName *samples, struct slName *features,
 				    int width, int height);
 
 char *heatmapGif(struct sqlConnection *conn, struct rawData *rdList,
 		 struct mapSettings *settings);
 
 void trashDirMD5File(struct tempName *tn, char *dirName, char *suffix, char *strToHash);
 
 
 #endif /* HGGENESETS_H */