src/utils/qa/findLevel.csh 1.19

Index: src/utils/qa/findLevel.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/findLevel.csh,v
retrieving revision 1.18
retrieving revision 1.19
diff -b -B -U 1000000 -r1.18 -r1.19
--- src/utils/qa/findLevel.csh	29 Jan 2010 00:24:43 -0000	1.18
+++ src/utils/qa/findLevel.csh	2 Feb 2010 00:29:51 -0000	1.19
@@ -1,107 +1,124 @@
 #!/bin/tcsh
 source `which qaConfig.csh`
 
 ################################
 #  
 #  09-26-2007
 #  Ann Zweig
 #
 #  find out which level in the trackDb directory
 #  a track is on, and which level the corresponding
 #  .html file is on.
 #
 ################################
 
-
 set db=""
 set tableName=""
 set currDir=""
 set dbs=""
 
 if ( $#argv != 2 ) then
   echo
   echo " searches trackDb hierarchy for your table and corresponding .html file"
   echo " also returns the value of the priority and visibility entries"
   echo " and the .ra file location for each" 
   echo
   echo "    usage:  database tableName"
   echo
   exit
 else
   set db=$argv[1]
   set tableName=$argv[2]
 endif
 echo
 
 if ( "$HOST" != "hgwdev" ) then
  echo "\n error: you must run this script on dev!\n"
  exit 1
 endif
 
 # make sure this is a valid database name
 set dbs=`hgsql -e "SELECT name FROM dbDb" hgcentraltest | grep -w $db`
 if ( "$dbs" != $db ) then
   echo
   echo "   Invalid database name.  Try again."
   echo
   exit
 endif
 
 # check for trackDb dir at $USER root
 file ~/trackDb | grep -q 'symbolic link'
 if ( $status ) then
   echo "\n  this program presumes you have a symlink to trackDb \
     in your home dir\n"
   exit
 else
   # start at the assembly level
   cd ~/trackDb/*/$db 
   set currDir=`pwd`
 endif
 
 ###########################################
 # find the level of the associated .html file
 # start at the assembly level
 cd ~/trackDb/*/$db
 set currDir=`pwd`
 
 if (-e $tableName.html) then
   # the .html file is found at the assembly-level
 
 else
   # the .html is not found at the assembly-level, go up to the organism level
   cd ..
   set currDir=`pwd`
   if (-e $tableName.html) then
     # the .html file is found at the organism-level
 
   else
     # the .html file is not found at the organism level, go up to the top level
     cd ..
     set currDir=`pwd`
     if (-e $tableName.html) then
       # the .html file is found at the top-level
     else
       # the .html file is not at the top level either - it does not exist
       echo " * the $tableName.html file does not exist at any level"
       set currDir=""
     endif
   endif
 endif
 if ($currDir != "") then
   echo " * html file: \
     `echo $currDir | sed 's^.*makeDb^~^'`/$tableName.html"
 endif
 echo
 
 
 ###########################################
 # find the trackDb.ra entry (using tdbQuery)
 
 echo " * trackDb:"
-tdbQuery -alpha "select track,priority,visibility,release,filePos from $db" \
- | grep -w -A4 "$tableName"
+set all=`tdbQuery "select track,priority,visibility,release,filePos from $db" \
+ | grep -w -A4 "$tableName"`
+# print this output
 tdbQuery "select track,priority,visibility,release,filePos from $db" \
  | grep -w -A4 "$tableName"
 
+set strict=`tdbQuery -strict "select track,priority,visibility,release,filePos from $db" \
+ | grep -w -A4 "$tableName"`
+set alpha=`tdbQuery -alpha "select track,priority,visibility,release,filePos from $db" \
+ | grep -w -A4 "$tableName"`
+
+if ( "$all" != "$strict" ) then
+ # print strict
+ tdbQuery -strict "select track,priority,visibility,release,filePos from $db" \
+ | grep -w -A4 "$tableName"
+endif
+
+if ( "$alpha" != "$all" && "$alpha" != "$strict" ) then
+ # print alpha
+ tdbQuery -alpha "select track,priority,visibility,release,filePos from $db" \
+ | grep -w -A4 "$tableName"
+endif
+
 exit 0