galt: changes by file

review to branch (2010-01-26 to 2010-02-02) v224

• src/hg/encode/hgEncodeSubmit/app/controllers/pipeline_controller.rb
  • 1.97 lines changed: 4, context: html, text, full: html, text
    adding deadline setting instead of hardwiring it, tolerates missing deadline.yml
• src/hg/encode/hgEncodeSubmit/app/views/pipeline/new.rhtml
  • 1.14 lines changed: 3, context: html, text, full: html, text
    adding deadline setting instead of hardwiring it, tolerates missing deadline.yml
• src/hg/encode/hgEncodeSubmit/app/views/pipeline/show.rhtml
  • 1.53 lines changed: 4, context: html, text, full: html, text
    adding deadline setting instead of hardwiring it, tolerates missing deadline.yml
• src/hg/encode/hgEncodeSubmit/config/deadline.yml.sample
  • 1.1 lines changed: 0, context: html, text, full: html, text
    adding deadline setting instead of hardwiring it, tolerates missing deadline.yml
• src/hg/encode/hgEncodeSubmit/lib/pipeline_background.rb
  • 1.19 lines changed: 7, context: html, text, full: html, text
    adding deadline setting instead of hardwiring it, tolerates missing deadline.yml
• src/hg/inc/versionInfo.h
  • 1.165 lines changed: 1, context: html, text, full: html, text
    "New version number v224"
• src/hg/lib/customFactory.c
  • 1.115 lines changed: 19, context: html, text, full: html, text
    emergency fix for customTrash db server going offline
• src/hg/makeDb/doc/danRer6.txt
  • 1.16 lines changed: 20, context: html, text, full: html, text
    adding chromosomes/ download
• src/hg/qaPushQ/qaPushQ.c
  • 1.121 lines changed: 23, context: html, text, full: html, text
    moved new greek byte function to kent/src/lib/obscure.c
  • 1.120 lines changed: 1, context: html, text, full: html, text
    activating D-queue link for encode
  • 1.119 lines changed: 35, context: html, text, full: html, text
    getting rid of redundant info at top, and adding Greek-Bytes B KB MB GB TB PB to totals displays
• src/hg/visiGene/vgPrepImage/jp2Dec.c
  • 1.2 lines changed: 27, context: html, text, full: html, text
    trying to get it to compile, using dynamic libjpeg since static no longer easily available, changing jpeg2000 dependency to default off since most people will not need it, using jpgTilesX.h as a minimal include file removes the conflict over "boolean" between common.h and libjpeg.h
• src/hg/visiGene/vgPrepImage/jpgTiles.c
  • 1.4 lines changed: 2, context: html, text, full: html, text
    trying to get it to compile, using dynamic libjpeg since static no longer easily available, changing jpeg2000 dependency to default off since most people will not need it, using jpgTilesX.h as a minimal include file removes the conflict over "boolean" between common.h and libjpeg.h
• src/hg/visiGene/vgPrepImage/jpgTiles.h
  • 1.2 lines changed: 1, context: html, text, full: html, text
    trying to get it to compile, using dynamic libjpeg since static no longer easily available, changing jpeg2000 dependency to default off since most people will not need it, using jpgTilesX.h as a minimal include file removes the conflict over "boolean" between common.h and libjpeg.h
• src/hg/visiGene/vgPrepImage/jpgTilesX.h
  • 1.1 lines changed: 0, context: html, text, full: html, text
    trying to get it to compile, using dynamic libjpeg since static no longer easily available, changing jpeg2000 dependency to default off since most people will not need it, using jpgTilesX.h as a minimal include file removes the conflict over "boolean" between common.h and libjpeg.h
• src/hg/visiGene/vgPrepImage/makefile
  • 1.6 lines changed: 9, context: html, text, full: html, text
    trying to get it to compile, using dynamic libjpeg since static no longer easily available, changing jpeg2000 dependency to default off since most people will not need it, using jpgTilesX.h as a minimal include file removes the conflict over "boolean" between common.h and libjpeg.h
• src/hg/visiGene/vgPrepImage/vgPrepImage.c
  • 1.5 lines changed: 1, context: html, text, full: html, text
    trying to get it to compile, using dynamic libjpeg since static no longer easily available, changing jpeg2000 dependency to default off since most people will not need it, using jpgTilesX.h as a minimal include file removes the conflict over "boolean" between common.h and libjpeg.h
• src/inc/obscure.h
  • 1.36 lines changed: 3, context: html, text, full: html, text
    moved new greek byte function to kent/src/lib/obscure.c
• src/lib/obscure.c
  • 1.53 lines changed: 19, context: html, text, full: html, text
    moved new greek byte function to kent/src/lib/obscure.c
• src/utils/bedToBigBed/bedToBigBed.c
  • 1.21 lines changed: 1, context: html, text, full: html, text
    gcc34 and some other compilers complained. but we should have the cast around the full expression anyways
• src/utils/qa/weeklybld/buildEnv.csh
  • 1.98 lines changed: 3, context: html, text, full: html, text
    v224 final build