src/utils/qa/countPerChrom.csh 1.17

1.17 2010/02/01 05:32:42 kuhn
reversed previous change. the hap chrom breaks the histogram if two assemblies have different hap sets. fix is too complicated for right now

Index: src/utils/qa/countPerChrom.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/countPerChrom.csh,v
retrieving revision 1.16
retrieving revision 1.17
diff -b -B -U 4 -r1.16 -r1.17
--- src/utils/qa/countPerChrom.csh	1 Feb 2010 05:12:48 -0000	1.16
+++ src/utils/qa/countPerChrom.csh	1 Feb 2010 05:32:42 -0000	1.17
@@ -158,9 +158,9 @@
   set table=$argv[2]
 end
 
 if ( $histo == "true" ) then
-  cat Xout$$ | grep chr | egrep -v "random|Un|$db" | sed "s/chr//" \
+  cat Xout$$ | grep chr | egrep -v "random|hap|Un|$db" | sed "s/chr//" \
     | sort -n -k1,1  > XgraphFile$$
   if ( $machineOut != "" ) then
     cat XgraphFile$$ | awk '{print $1, $3}' > XgraphFile2$$ 
     graph.csh XgraphFile$$  $histosize > Xgraph1$$