rhead: changes by file

review to branch (2010-01-26 to 2010-02-02) v224

• src/hg/makeDb/trackDb/trackDb.chainNet.ra
  • 1.57 lines changed: 3, context: html, text, full: html, text
    Removed release alpha/beta from rheMac1 nets, chains, chainNets and adjusted priority to match rheMac2.
  • 1.53 lines changed: 2, context: html, text, full: html, text
    Removed commented-out lines.
• src/hg/makeDb/trackDb/chicken/trackDb.ra
  • 1.19 lines changed: 7, context: html, text, full: html, text
    Removing trackDb.ra refs to ponAbe2 nets and chains -- these are in composites now.
• src/hg/makeDb/trackDb/chicken/galGal3/trackDb.chainNet.ra
  • 1.4 lines changed: 6, context: html, text, full: html, text
    Changed horse chain and net shortLabels to match chainNet shortLabels.
  • 1.3 lines changed: 6, context: html, text, full: html, text
    Adding chain and net shortLabel overrides for opossum to match the chainNet overrides.
• src/hg/makeDb/trackDb/chimp/trackDb.chainNet.ra
  • 1.11 lines changed: 6, context: html, text, full: html, text
    Adding chain and net shortLabel overrides for opossum to match the chainNet overrides.
• src/hg/makeDb/trackDb/chimp/panTro2/trackDb.ra
  • 1.51 lines changed: 6, context: html, text, full: html, text
    Removing trackDb.ra refs to ponAbe2 nets and chains -- these are in composites now.
• src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra
  • 1.14 lines changed: 6, context: html, text, full: html, text
    Adding chain and net shortLabel overrides for opossum to match the chainNet overrides.
• src/hg/makeDb/trackDb/dog/canFam2/trackDb.chainNet.ra
  • 1.5 lines changed: 5, context: html, text, full: html, text
    Changed horse chain and net shortLabels to match chainNet shortLabels.
  • 1.4 lines changed: 3, context: html, text, full: html, text
    Removing override for chainNetMonDom4 shortLabel, as this is also done at the dog level.
• src/hg/makeDb/trackDb/dog/canFam2/trackDb.ra
  • 1.48 lines changed: 10, context: html, text, full: html, text
    Removed trackDb.ra refs to equCab1 net and chain -- these are in composites now.
• src/hg/makeDb/trackDb/human/trackDb.chainNet.ra
  • 1.33 lines changed: 6, context: html, text, full: html, text
    Changed bosTau3 chain and net shortLabels to match chainNet shortLabels.
  • 1.32 lines changed: 3, context: html, text, full: html, text
    Removed release alpha/beta from rheMac1 nets, chains, chainNets and adjusted priority to match rheMac2.
  • 1.31 lines changed: 6, context: html, text, full: html, text
    Adding chain and net shortLabel overrides for chimp that match the chainNet overrides.
• src/hg/makeDb/trackDb/human/hg17/trackDb.chainNet.ra
  • 1.17 lines changed: 6, context: html, text, full: html, text
    Changed bosTau2 chain and net shortLabels to match chainNet shortLabels.
  • 1.15 lines changed: 9, context: html, text, full: html, text
    Added o_db shortLabels to panTro2 chainNet and chain and net.
  • 1.14 lines changed: 6, context: html, text, full: html, text
    Adding chain and net shortLabel overrides for opossum to match the chainNet overrides.
• src/hg/makeDb/trackDb/human/hg17/trackDb.ra
  • 1.442 lines changed: 24, context: html, text, full: html, text
    Removed lingering release beta on panTro2 chain and net.
• src/hg/makeDb/trackDb/human/hg18/trackDb.chainNet.ra
  • 1.14 lines changed: 5, context: html, text, full: html, text
    Changed horse chain and net shortLabels to match chainNet shortLabels.
  • 1.12 lines changed: 6, context: html, text, full: html, text
    Adding chain and net shortLabel overrides for opossum to match the chainNet overrides.
  • 1.11 lines changed: 6, context: html, text, full: html, text
    Adding chain and net shortLabel overrides to match the chainNet shortLabel overrides.
• src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra
  • 1.30 lines changed: 1, context: html, text, full: html, text
    Removed redundant shortLabel on chainNetEquCab1.
• src/hg/makeDb/trackDb/mouse/trackDb.ra
  • 1.192 lines changed: 26, context: html, text, full: html, text
    Removed release alpha/beta from rheMac1 nets, chains, chainNets and adjusted priority to match rheMac2.
• src/hg/makeDb/trackDb/mouse/mm7/trackDb.chainNet.ra
  • 1.13 lines changed: 6, context: html, text, full: html, text
    Changed bosTau2 chain and net shortLabels to match chainNet shortLabels.
  • 1.12 lines changed: 6, context: html, text, full: html, text
    Added o_Organism shortLabel override to match the chainNet override.
  • 1.11 lines changed: 6, context: html, text, full: html, text
    Adding chain and net shortLabel overrides for chimp that match the chainNet overrides.
• src/hg/makeDb/trackDb/mouse/mm7/trackDb.ra
  • 1.61 lines changed: 3, context: html, text, full: html, text
    Removed release alpha/beta from rheMac1 nets, chains, chainNets and adjusted priority to match rheMac2.
• src/hg/makeDb/trackDb/mouse/mm8/trackDb.chainNet.ra
  • 1.11 lines changed: 6, context: html, text, full: html, text
    Adding chain and net shortLabel overrides to match the chainNet shortLabel overrides.
• src/hg/makeDb/trackDb/mouse/mm8/trackDb.ra
  • 1.64 lines changed: 3, context: html, text, full: html, text
    Removed individual chain and net settings for chicken, now that they have been moved into composite tracks.
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.chainNet.ra
  • 1.7 lines changed: 6, context: html, text, full: html, text
    Changed bosTau3 chain and net shortLabels to match chainNet shortLabels.
  • 1.6 lines changed: 7, context: html, text, full: html, text
    Changed horse chain and net shortLabels to match chainNet shortLabels.
  • 1.5 lines changed: 6, context: html, text, full: html, text
    Adding chain and net shortLabel overrides for opossum to match the chainNet overrides.
• src/hg/makeDb/trackDb/opossum/monDom4/trackDb.chainNet.ra
  • 1.10 lines changed: 6, context: html, text, full: html, text
    Adding chain and net shortLabel overrides to match the chainNet shortLabel overrides.
• src/hg/makeDb/trackDb/platypus/trackDb.chainNet.ra
  • 1.11 lines changed: 6, context: html, text, full: html, text
    Adding chain and net shortLabel overrides for opossum to match the chainNet overrides.
• src/hg/makeDb/trackDb/rat/trackDb.chainNet.ra
  • 1.17 lines changed: 6, context: html, text, full: html, text
    Adding chain and net shortLabel overrides to match the chainNet shortLabel overrides.
• src/hg/makeDb/trackDb/worm/ce4/description.html
  • 1.9 lines changed: 1, context: html, text, full: html, text
    Fixed broken links to wustl.
• src/hg/makeDb/trackDb/worm/ce4/gap.html
  • 1.6 lines changed: 1, context: html, text, full: html, text
    Fixed broken links to wustl.
• src/hg/makeDb/trackDb/worm/ce4/gold.html
  • 1.7 lines changed: 1, context: html, text, full: html, text
    Fixed broken links to wustl.
• src/hg/makeDb/trackDb/worm/ce5/description.html
  • 1.4 lines changed: 2, context: html, text, full: html, text
    Fixed broken links to wustl.
• src/hg/makeDb/trackDb/worm/ce5/gap.html
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Fixed broken links to wustl.
• src/hg/makeDb/trackDb/worm/ce5/gold.html
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Fixed broken links to wustl.
• src/hg/makeDb/trackDb/xenTro/xenTro2/trackDb.chainNet.ra
  • 1.4 lines changed: 6, context: html, text, full: html, text
    Adding chain and net shortLabel overrides for opossum to match the chainNet overrides.
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Replaced hard-coded galGal2 with o_db variable.
• src/hg/makeDb/trackDb/xenTro/xenTro2/trackDb.ra
  • 1.23 lines changed: 18, context: html, text, full: html, text
    Removed individual chain and net settings for chicken, now that they have been moved into composite tracks.