src/hg/archaeStuff/data/Genome-info-mods 1.95

Index: src/hg/archaeStuff/data/Genome-info-mods
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/archaeStuff/data/Genome-info-mods,v
retrieving revision 1.94
retrieving revision 1.95
diff -b -B -U 4 -r1.94 -r1.95
--- src/hg/archaeStuff/data/Genome-info-mods	20 Jan 2010 22:34:07 -0000	1.94
+++ src/hg/archaeStuff/data/Genome-info-mods	26 Jan 2010 03:18:33 -0000	1.95
@@ -793,16 +793,16 @@
 Trna_abr: Pyro_arse-tRNAs
 SP_ID:    PYRAE 
 
 Org_abr:  Pyro_neut_V24Sta
-Menu_name: Pyrobaculum neutrophilus V24Sta
-Org_name: Pyrobaculum neutrophilus V24Sta
+Menu_name: Pyrobaculum neutrophilum V24Sta
+Org_name: Pyrobaculum neutrophilum V24Sta
 DB_name:  therNeut1
 Tax_ID:   444157: Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum. 
 SP_ID:    THENV PYRAE 
 Domain:   Archaea
 DB_src:   NCBI
-Tax_name: Pyrobaculum neutrophilus V24Sta
+Tax_name: Pyrobaculum neutrophilum V24Sta
 BLAT_IDs: 20526 20527
 TIGR_ID:  0
 JGI_ID:   641380436
 String_ID: 0
@@ -827,9 +827,9 @@
 Trna_abr: Ther_neut-tRNAs
 Multiz:   PbacTtxCmaTpe pyroIsla1 pyrAer1 pyroOgun03 pyroArse1 pyroCali1 therTena1 vulcDist0 caldMaqu1 therPend1
 Public_multiz:   PbacCmaTpe pyroIsla1 pyrAer1 pyroArse1 pyroCali1 vulcDist0 caldMaqu1 therPend1
 Phylo:    ((((((((pyroArse1,pyroOgun03),pyrAer1),(pyroIsla1,therNeut1)),pyroCali1),therTena1),vulcDist0),caldMaqu1),therPend1)
-Sp_info: Initially placed in the genus <I>Thermoproteus</I>, this species is in the process of formally being reclassified into the <I>Pyrobaculum</I> genus. It was originally classified in 1983 (<a href="http://www.nature.com/nature/journal/v301/n5900/abs/301511a0.html">Fischer et al., Nature 30:511-513</a>) when few Thermoproteales organisms were described and the classification decision did not utilize ribosomal RNA sequence information.  Now, it clearly falls within <I>Pyrobaculum</I> in both rRNA-based trees (see analyses presented for the <I>P. oguniense</I> isolation <a href="http://ijs.sgmjournals.org/cgi/content/abstract/51/2/303">Sako, et al., 2001</a>) and protein-based trees now possible with the complete genome sequence (Lowe et al., in preparation).  <I>Pyrobaculum neutrophilus</I> and <I>Pyrobaculum islandicum</I> are the two most-closely related species among the five <I>Pyrobaculum</I> species sequenced to date -- both were isolated from hot springs in Iceland.
+Sp_info: Initially placed in the genus <I>Thermoproteus</I>, this species is in the process of formally being reclassified into the <I>Pyrobaculum</I> genus. It was originally classified in 1983 (<a href="http://www.nature.com/nature/journal/v301/n5900/abs/301511a0.html">Fischer et al., Nature 30:511-513</a>) when few Thermoproteales organisms were described and the classification decision did not utilize ribosomal RNA sequence information.  Now, it clearly falls within <I>Pyrobaculum</I> in both rRNA-based trees (see analyses presented for the <I>P. oguniense</I> isolation <a href="http://ijs.sgmjournals.org/cgi/content/abstract/51/2/303">Sako, et al., 2001</a>) and protein-based trees now possible with the complete genome sequence (Lowe et al., in preparation).  <I>Pyrobaculum neutrophilum</I> and <I>Pyrobaculum islandicum</I> are the two most-closely related species among the five <I>Pyrobaculum</I> species sequenced to date -- both were isolated from hot springs in Iceland.
 
 Org_abr:  Pyro_ogun
 Org_name:  Pyrobaculum oguniense
 Menu_name: Pyrobaculum oguniense