src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.42
1.42 2010/01/22 23:14:32 rhead
Switching equCab1 and equCab2 chains and nets to composites. EquCab1 is currently on RR for hg18, mm8, panTro2 and rn4. EquCab1 is on RR for canFam2, galGal3, hg19, mm9, monDom5, ornaAna1.
Index: src/hg/makeDb/trackDb/trackDb.chainNet.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.chainNet.ra,v
retrieving revision 1.41
retrieving revision 1.42
diff -b -B -U 1000000 -r1.41 -r1.42
--- src/hg/makeDb/trackDb/trackDb.chainNet.ra 22 Jan 2010 19:12:37 -0000 1.41
+++ src/hg/makeDb/trackDb/trackDb.chainNet.ra 22 Jan 2010 23:14:32 -0000 1.42
@@ -1,3487 +1,3484 @@
# "$Id$";
# release alpha until individual fr2 tracks are obsolete
track chainNetFr2
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb fr2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetFr2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetFr2
spectrum on
track chainFr2
release alpha
subTrack chainNetFr2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain fr2
track chainNetFr2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetFr2
track netFr2
release alpha
subTrack chainNetFr2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign fr2 chainFr2
# release alpha until individual fr1 tracks are obsolete
track chainNetFr1
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb fr1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetFr1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetFr1
spectrum on
track chainFr1
release alpha
subTrack chainNetFr1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain fr1
track chainNetFr1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetFr1
track netFr1
release alpha
subTrack chainNetFr1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign fr1 chainFr1
track chainNetTetNig2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb tetNig2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetTetNig2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetTetNig2
spectrum on
track chainTetNig2
subTrack chainNetTetNig2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain tetNig2
track chainNetTetNig2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetTetNig2
track netTetNig2
subTrack chainNetTetNig2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign tetNig2 chainTetNig2
track chainNetTetNig1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb tetNig1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetTetNig1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetTetNig1
spectrum on
track chainTetNig1
release alpha
subTrack chainNetTetNig1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain tetNig1
track chainNetTetNig1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetTetNig1
track netTetNig1
release alpha
subTrack chainNetTetNig1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign tetNig1 chainTetNig1
track chainNetDanRer6
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer6
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer6Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetDanRer6
spectrum on
track chainDanRer6
subTrack chainNetDanRer6Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain danRer6
track chainNetDanRer6Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetDanRer6
track netDanRer6
subTrack chainNetDanRer6Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign danRer6 chainDanRer6
track chainNetDanRer5
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer5
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer5Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetDanRer5
spectrum on
track chainDanRer5
release alpha
subTrack chainNetDanRer5Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain danRer5
track chainNetDanRer5Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetDanRer5
track netDanRer5
release alpha
subTrack chainNetDanRer5Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign danRer5 chainDanRer5
track chainNetDanRer4
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer4
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer4Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetDanRer4
spectrum on
track chainDanRer4
release alpha
subTrack chainNetDanRer4Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain danRer4
track chainNetDanRer4Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetDanRer4
track netDanRer4
release alpha
subTrack chainNetDanRer4Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign danRer4 chainDanRer4
track chainNetDanRer3
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer3
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer3Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetDanRer3
spectrum on
track chainDanRer3
release alpha
subTrack chainNetDanRer3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain danRer3
track chainNetDanRer3Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetDanRer3
track netDanRer3
release alpha
subTrack chainNetDanRer3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign danRer3 chainDanRer3
track chainNetDanRer2
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetDanRer2
spectrum on
track chainDanRer2
release alpha
subTrack chainNetDanRer2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain danRer2
track chainNetDanRer2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetDanRer2
track netDanRer2
release alpha
subTrack chainNetDanRer2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign danRer2 chainDanRer2
track chainNetDanRer1
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetDanRer1
spectrum on
track chainDanRer1
release alpha
subTrack chainNetDanRer1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain danRer1
track chainNetDanRer1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetDanRer1
track netDanRer1
release alpha
subTrack chainNetDanRer1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign danRer1 chainDanRer1
track chainNetXenTro2
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb xenTro2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetXenTro2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetXenTro2
spectrum on
track chainXenTro2
release alpha
subTrack chainNetXenTro2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain xenTro2
track chainNetXenTro2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetXenTro2
track netXenTro2
release alpha
subTrack chainNetXenTro2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign xenTro2 chainXenTro2
track chainNetXenTro1
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb xenTro1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetXenTro1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetXenTro1
spectrum on
track chainXenTro1
release alpha
subTrack chainNetXenTro1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain xenTro1
track chainNetXenTro1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetXenTro1
track netXenTro1
release alpha
subTrack chainNetXenTro1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign xenTro1 chainXenTro1
# release alpha until individual oryLat2 tracks are obsolete
track chainNetOryLat2
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 165.5
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb oryLat2
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetOryLat2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetOryLat2
spectrum on
track chainOryLat2
release alpha
subTrack chainNetOryLat2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain oryLat2
otherDb oryLat2
track chainNetOryLat2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetOryLat2
track netOryLat2
release alpha
subTrack chainNetOryLat2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign oryLat2 chainOryLat2
otherDb oryLat2
# release alpha since oryLat1 is obsolete
track chainNetOryLat1
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 165.5
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb oryLat1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetOryLat1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetOryLat1
spectrum on
track chainOryLat1
release alpha
subTrack chainNetOryLat1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain oryLat1
otherDb oryLat1
track chainNetOryLat1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetOryLat1
track netOryLat1
release alpha
subTrack chainNetOryLat1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign oryLat1 chainOryLat1
otherDb oryLat1
# release alpha until individual gasAcu1 tracks are obsolete
track chainNetGasAcu1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb gasAcu1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetGasAcu1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetGasAcu1
spectrum on
track chainGasAcu1
release alpha
subTrack chainNetGasAcu1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain gasAcu1
track chainNetGasAcu1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetGasAcu1
track netGasAcu1
release alpha
subTrack chainNetGasAcu1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign gasAcu1 chainGasAcu1
# release alpha until individual galGal3 tracks are obsolete
track chainNetGalGal3
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb galGal3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetGalGal3Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetGalGal3
spectrum on
track chainGalGal3
release alpha
subTrack chainNetGalGal3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain galGal3
track chainNetGalGal3Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetGalGal3
track netGalGal3
release alpha
subTrack chainNetGalGal3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign galGal3 chainGalGal3
# release alpha until individual galGal2 tracks are obsolete
track chainNetGalGal2
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb galGal2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetGalGal2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetGalGal2
spectrum on
track chainGalGal2
release alpha
subTrack chainNetGalGal2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain galGal2
track chainNetGalGal2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetGalGal2
track netGalGal2
release alpha
subTrack chainNetGalGal2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign galGal2 chainGalGal2
# release alpha until individual taeGut1 tracks are obsolete
track chainNetTaeGut1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb taeGut1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetTaeGut1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetTaeGut1
spectrum on
track chainTaeGut1
release alpha
subTrack chainNetTaeGut1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain taeGut1
track chainNetTaeGut1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetTaeGut1
track netTaeGut1
release alpha
subTrack chainNetTaeGut1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign taeGut1 chainTaeGut1
# release alpha until ornAna1 individual chain/net tracks phased out
track chainNetOrnAna1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 191
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb ornAna1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetOrnAna1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetOrnAna1
spectrum on
track chainOrnAna1
release alpha
subTrack chainNetOrnAna1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain ornAna1
track chainNetOrnAna1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetOrnAna1
track netOrnAna1
release alpha
subTrack chainNetOrnAna1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign ornAna1 chainOrnAna1
# release alpha until anoCar1 individual chain/net tracks phased out
track chainNetAnoCar1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 191
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb anoCar1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetAnoCar1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetAnoCar1
spectrum on
track chainAnoCar1
release alpha
subTrack chainNetAnoCar1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain anoCar1
track chainNetAnoCar1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetAnoCar1
track netAnoCar1
release alpha
subTrack chainNetAnoCar1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign anoCar1 chainAnoCar1
# release alpha until petMar1 individual chain/net tracks phased out
track chainNetPetMar1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 191
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb petMar1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetPetMar1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetPetMar1
spectrum on
track chainPetMar1
release alpha
subTrack chainNetPetMar1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain petMar1
track chainNetPetMar1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetPetMar1
track netPetMar1
release alpha
subTrack chainNetPetMar1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign petMar1 chainPetMar1
# release alpha until braFlo1 individual chain/net tracks phased out
track chainNetBraFlo1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 191
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb braFlo1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetBraFlo1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetBraFlo1
spectrum on
track chainBraFlo1
release alpha
subTrack chainNetBraFlo1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain braFlo1
track chainNetBraFlo1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetBraFlo1
track netBraFlo1
release alpha
subTrack chainNetBraFlo1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign braFlo1 chainBraFlo1
track chainNetMacEug1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 191
color 100,50,0
altColor 255,240,200
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb macEug1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainMacEug1
subTrack chainNetMacEug1
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain macEug1
track netMacEug1
subTrack chainNetMacEug1
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign macEug1 chainMacEug1
track chainNetLoxAfr3
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 191
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb loxAfr3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetLoxAfr3Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetLoxAfr3
spectrum on
track chainLoxAfr3
subTrack chainNetLoxAfr3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain loxAfr3
track chainNetLoxAfr3Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetLoxAfr3
track netLoxAfr3
subTrack chainNetLoxAfr3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign loxAfr3 chainLoxAfr3
track chainNetLoxAfr2
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 191
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb loxAfr2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetLoxAfr2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetLoxAfr2
spectrum on
track chainLoxAfr2
subTrack chainNetLoxAfr2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain loxAfr2
track chainNetLoxAfr2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetLoxAfr2
track netLoxAfr2
subTrack chainNetLoxAfr2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign loxAfr2 chainLoxAfr2
track chainNetLoxAfr1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 191
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb loxAfr1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetLoxAfr1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetLoxAfr1
spectrum on
track chainLoxAfr1
subTrack chainNetLoxAfr1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain loxAfr1
track chainNetLoxAfr1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetLoxAfr1
track netLoxAfr1
subTrack chainNetLoxAfr1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign loxAfr1 chainLoxAfr1
track chainNetMonDom1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 191
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb monDom1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetMonDom1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetMonDom1
spectrum on
track chainMonDom1
release alpha
subTrack chainNetMonDom1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain monDom1
track chainNetMonDom1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetMonDom1
track netMonDom1
release alpha
subTrack chainNetMonDom1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign monDom1 chainMonDom1
track chainNetMonDom4
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 191
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb monDom4
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetMonDom4Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetMonDom4
spectrum on
track chainMonDom4
release alpha
subTrack chainNetMonDom4Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain monDom4
track chainNetMonDom4Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetMonDom4
track netMonDom4
release alpha
subTrack chainNetMonDom4Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign monDom4 chainMonDom4
track chainNetMonDom5
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 191
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb monDom5
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetMonDom5Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetMonDom5
spectrum on
track chainMonDom5
subTrack chainNetMonDom5Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain monDom5
track chainNetMonDom5Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetMonDom5
track netMonDom5
subTrack chainNetMonDom5Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign monDom5 chainMonDom5
track chainNetEriEur1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 191
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb eriEur1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetEriEur1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetEriEur1
spectrum on
track chainEriEur1
subTrack chainNetEriEur1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain eriEur1
track chainNetEriEur1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetEriEur1
track netEriEur1
subTrack chainNetEriEur1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign eriEur1 chainEriEur1
track chainNetSorAra1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb sorAra1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetSorAra1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetSorAra1
spectrum on
track chainSorAra1
subTrack chainNetSorAra1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain sorAra1
track chainNetSorAra1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetSorAra1
track netSorAra1
subTrack chainNetSorAra1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign sorAra1 chainSorAra1
# release alpha until mm9 individual chain/net tracks phased out
track chainNetMm9
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb mm9
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetMm9Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetMm9
spectrum on
track chainMm9
release alpha
subTrack chainNetMm9Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain mm9
track chainNetMm9Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetMm9
track netMm9
release alpha
subTrack chainNetMm9Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign mm9 chainMm9
# release alpha until mm8 individual chain/net tracks phased out
track chainNetMm8
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb mm8
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetMm8Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetMm8
spectrum on
track chainMm8
release alpha
subTrack chainNetMm8Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain mm8
track chainNetMm8Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetMm8
track netMm8
release alpha
subTrack chainNetMm8Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign mm8 chainMm8
# release alpha until mm7 individual chain/net tracks phased out
track chainNetMm7
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb mm7
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetMm7Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetMm7
spectrum on
track chainMm7
release alpha
subTrack chainNetMm7Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain mm7
track chainNetMm7Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetMm7
track netMm7
release alpha
subTrack chainNetMm7Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign mm7 chainMm7
# release alpha until mm6 individual chain/net tracks phased out
track chainNetMm6
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb mm6
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetMm6Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetMm6
spectrum on
track chainMm6
release alpha
subTrack chainNetMm6Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain mm6
track chainNetMm6Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetMm6
track netMm6
release alpha
subTrack chainNetMm6Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign mm6 chainMm6
track chainNetMm5
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 255,255,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb mm5
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainMm5
release alpha
subTrack chainNetMm5
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain mm5
track netMm5
release alpha
subTrack chainNetMm5
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign mm5 chainMm5
# release alpha until rn4 individual chain/net tracks phased out
track chainNetRn4
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb rn4
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetRn4Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetRn4
spectrum on
track chainRn4
release alpha
subTrack chainNetRn4Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain rn4
track chainNetRn4Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetRn4
track netRn4
release alpha
subTrack chainNetRn4Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign rn4 chainRn4
# release alpha until rn3 individual chain/net tracks phased out
track chainNetRn3
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb rn3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetRn3Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetRn3
spectrum on
track chainRn3
release alpha
subTrack chainNetRn3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain rn3
track chainNetRn3Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetRn3
track netRn3
release alpha
subTrack chainNetRn3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign rn3 chainRn3
# release alpha until cavPor3 individual chain/net tracks phased out
track chainNetCavPor3
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb cavPor3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetCavPor3Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetCavPor3
spectrum on
track chainCavPor3
release alpha
subTrack chainNetCavPor3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain cavPor3
track chainNetCavPor3Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetCavPor3
track netCavPor3
release alpha
subTrack chainNetCavPor3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign cavPor3 chainCavPor3
# release alpha until cavPor2 individual chain/net tracks phased out
track chainNetCavPor2
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb cavPor2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetCavPor2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetCavPor2
spectrum on
track chainCavPor2
release alpha
subTrack chainNetCavPor2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain cavPor2
track chainNetCavPor2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetCavPor2
track netCavPor2
release alpha
subTrack chainNetCavPor2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign cavPor2 chainCavPor2
track chainNetOryCun2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb oryCun2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetOryCun2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetOryCun2
spectrum on
track chainOryCun2
subTrack chainNetOryCun2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain oryCun2
track chainNetOryCun2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetOryCun2
track netOryCun2
subTrack chainNetOryCun2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign oryCun2 chainOryCun2
track chainNetOryCun1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb oryCun1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetOryCun1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetOryCun1
spectrum on
track chainOryCun1
subTrack chainNetOryCun1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain oryCun1
track chainNetOryCun1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetOryCun1
track netOryCun1
subTrack chainNetOryCun1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign oryCun1 chainOryCun1
track chainNetEquCab2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb equCab2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetEquCab2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetEquCab2
spectrum on
track chainEquCab2
subTrack chainNetEquCab2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain equCab2
track chainNetEquCab2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetEquCab2
track netEquCab2
subTrack chainNetEquCab2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign equCab2 chainEquCab2
track chainNetEquCab1
-release alpha
compositeTrack on
-shortLabel $o_db Chain/Net
+shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb equCab1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetEquCab1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetEquCab1
spectrum on
track chainEquCab1
- release alpha
subTrack chainNetEquCab1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain equCab1
track chainNetEquCab1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetEquCab1
track netEquCab1
- release alpha
subTrack chainNetEquCab1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign equCab1 chainEquCab1
track chainNetEchTel1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb echTel1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetEchTel1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetEchTel1
spectrum on
track chainEchTel1
subTrack chainNetEchTel1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain echTel1
track chainNetEchTel1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetEchTel1
track netEchTel1
subTrack chainNetEchTel1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign echTel1 chainEchTel1
track chainNetDasNov2
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb dasNov2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetDasNov2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetDasNov2
spectrum on
track chainDasNov2
subTrack chainNetDasNov2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain dasNov2
track chainNetDasNov2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetDasNov2
track netDasNov2
subTrack chainNetDasNov2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign dasNov2 chainDasNov2
track chainNetDasNov1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb dasNov1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetDasNov1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetDasNov1
spectrum on
track chainDasNov1
subTrack chainNetDasNov1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain dasNov1
track chainNetDasNov1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetDasNov1
track netDasNov1
subTrack chainNetDasNov1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign dasNov1 chainDasNov1
track chainNetSusScr1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 475.3
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb susScr1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetSusScr1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetSusScr1
spectrum on
track chainSusScr1
subTrack chainNetSusScr1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain susScr1
track chainNetSusScr1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetSusScr1
track netSusScr1
subTrack chainNetSusScr1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign susScr1 chainSusScr1
track chainNetBosTau4
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb bosTau4
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetBosTau4Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetBosTau4
spectrum on
track chainBosTau4
subTrack chainNetBosTau4Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain bosTau4
track chainNetBosTau4Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetBosTau4
track netBosTau4
subTrack chainNetBosTau4Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign bosTau4 chainBosTau4
track chainNetBosTau3
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb bosTau3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetBosTau3Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetBosTau3
spectrum on
track chainBosTau3
subTrack chainNetBosTau3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain bosTau3
track chainNetBosTau3Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetBosTau3
track netBosTau3
subTrack chainNetBosTau3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign bosTau3 chainBosTau3
track chainNetBosTau2
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb bosTau2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetBosTau2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetBosTau2
spectrum on
track chainBosTau2
subTrack chainNetBosTau2Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain bosTau2
track chainNetBosTau2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetBosTau2
track netBosTau2
subTrack chainNetBosTau2Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign bosTau2 chainBosTau2
track chainNetBosTau1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb bosTau1
chainMinScore 1000
chainLinearGap loose
spectrum on
html chainNet
track chainNetBosTau1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetBosTau1
spectrum on
track chainBosTau1
subTrack chainNetBosTau1Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain bosTau1
track chainNetBosTau1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetBosTau1
track netBosTau1
subTrack chainNetBosTau1Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign bosTau1 chainBosTau1
track chainNetAilMel1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 415.3
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb ailMel1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetAilMel1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetAilMel1
spectrum on
track chainAilMel1
subTrack chainNetAilMel1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain ailMel1
track chainNetAilMel1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetAilMel1
track netAilMel1
subTrack chainNetAilMel1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign ailMel1 chainAilMel1
track chainNetCanFam2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb canFam2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetCanFam2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetCanFam2
spectrum on
track chainCanFam2
subTrack chainNetCanFam2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain canFam2
track chainNetCanFam2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetCanFam2
track netCanFam2
subTrack chainNetCanFam2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign canFam2 chainCanFam2
# release alpha until felCat3 individual tracks phased out
track chainNetFelCat3
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb felCat3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetFelCat3Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetFelCat3
spectrum on
track chainFelCat3
subTrack chainNetFelCat3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain felCat3
track chainNetFelCat3Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetFelCat3
track netFelCat3
subTrack chainNetFelCat3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign felCat3 chainFelCat3
track chainNetVenter
compositeTrack on
shortLabel Venter Chain/Net
longLabel J. Craig Venter Chain and Net Alignments
subGroup1 view Views chain=Chains net=Nets
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 500
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
track chainNetVenterViewchain
shortLabel Chains
view chain
visibility pack
subTrack chainNetVenter
spectrum on
track chainVenter1
subTrack chainNetVenterViewchain off
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
color 100,50,0
altColor 255,240,200
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
type chain venter1
otherDb venter1
track chainNetVenterViewnet
shortLabel Nets
view net
visibility full
subTrack chainNetVenter
track netVenter1
subTrack chainNetVenterViewnet off
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign venter1 chainVenter1
otherDb venter1
track chainNetHg18
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb hg18
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetHg18Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetHg18
spectrum on
track chainHg18
release alpha
subTrack chainNetHg18Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain hg18
track chainNetHg18Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetHg18
track netHg18
release alpha
subTrack chainNetHg18Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign hg18 chainHg18
track chainNetHg19
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb hg19
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetHg19Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetHg19
spectrum on
track chainHg19
subTrack chainNetHg19Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain hg19
track chainNetHg19Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetHg19
track netHg19
subTrack chainNetHg19Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign hg19 chainHg19
track chainNetHg17
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb hg17
chainMinScore 1000
chainLinearGap loose
html chainNet
track chainNetHg17Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetHg17
spectrum on
track chainHg17
release alpha
subTrack chainNetHg17Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain hg17
track chainNetHg17Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetHg17
track netHg17
release alpha
subTrack chainNetHg17Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign hg17 chainHg17
track chainNetPanTro2
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb panTro2
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetPanTro2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetPanTro2
spectrum on
track chainPanTro2
release alpha
subTrack chainNetPanTro2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain panTro2
track chainNetPanTro2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetPanTro2
track netPanTro2
release alpha
subTrack chainNetPanTro2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign panTro2 chainPanTro2
track chainNetPanTro1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb panTro1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetPanTro1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetPanTro1
spectrum on
track chainPanTro1
release alpha
subTrack chainNetPanTro1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain panTro1
track chainNetPanTro1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetPanTro1
track netPanTro1
release alpha
subTrack chainNetPanTro1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign panTro1 chainPanTro1
track chainNetGorGor1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb gorGor1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetGorGor1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetGorGor1
spectrum on
track chainGorGor1
subTrack chainNetGorGor1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain gorGor1
track chainNetGorGor1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetGorGor1
track netGorGor1
subTrack chainNetGorGor1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign gorGor1 chainGorGor1
track chainNetPonAbe2
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb ponAbe2
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetPonAbe2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetPonAbe2
spectrum on
track chainPonAbe2
release alpha
subTrack chainNetPonAbe2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain ponAbe2
track chainNetPonAbe2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetPonAbe2
track netPonAbe2
release alpha
subTrack chainNetPonAbe2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign ponAbe2 chainPonAbe2
track chainNetTupBel1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb tupBel1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetTupBel1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetTupBel1
spectrum on
track chainTupBel1
subTrack chainNetTupBel1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain tupBel1
track chainNetTupBel1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetTupBel1
track netTupBel1
subTrack chainNetTupBel1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign tupBel1 chainTupBel1
track chainNetOtoGar1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb otoGar1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetOtoGar1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetOtoGar1
spectrum on
track chainOtoGar1
subTrack chainNetOtoGar1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain otoGar1
track chainNetOtoGar1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetOtoGar1
track netOtoGar1
subTrack chainNetOtoGar1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign otoGar1 chainOtoGar1
track chainNetCalJac1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb calJac1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetCalJac1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetCalJac1
spectrum on
track chainCalJac1
subTrack chainNetCalJac1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain calJac1
track chainNetCalJac1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetCalJac1
track netCalJac1
subTrack chainNetCalJac1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign calJac1 chainCalJac1
track chainNetRheMac2
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb rheMac2
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetRheMac2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetRheMac2
spectrum on
track chainRheMac2
release alpha
subTrack chainNetRheMac2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain rheMac2
track chainNetRheMac2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetRheMac2
track netRheMac2
release alpha
subTrack chainNetRheMac2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign rheMac2 chainRheMac2
track chainNetRheMac1
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 100,50,0
altColor 255,240,200
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb rheMac1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetRheMac1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetRheMac1
spectrum on
track chainRheMac1
release alpha
subTrack chainNetRheMac1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain rheMac1
track chainNetRheMac1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetRheMac1
track netRheMac1
release alpha
subTrack chainNetRheMac1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign rheMac1 chainRheMac1
track chainNetPoodle
compositeTrack on
shortLabel Poodle Chain/Net
longLabel Poodle Chain and Net Alignments
subGroup1 view Views chain=Chains net=Nets
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 500
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
track chainNetPoodleViewchain
shortLabel Chains
view chain
visibility pack
subTrack chainNetPoodle
spectrum on
track chainCanFamPoodle1
subTrack chainNetPoodleViewchain off
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
color 100,50,0
altColor 255,240,200
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
type chain canFamPoodle1
otherDb canFamPoodle1
track chainNetPoodleViewnet
shortLabel Nets
view net
visibility full
subTrack chainNetPoodle
track netCanFamPoodle1
subTrack chainNetPoodleViewnet off
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign canFamPoodle1 chainCanFamPoodle1
otherDb canFamPoodle1