src/utils/qa/getRRtables.csh 1.6

Index: src/utils/qa/getRRtables.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/getRRtables.csh,v
retrieving revision 1.5
retrieving revision 1.6
diff -b -B -U 1000000 -r1.5 -r1.6
--- src/utils/qa/getRRtables.csh	8 Jun 2009 22:55:03 -0000	1.5
+++ src/utils/qa/getRRtables.csh	22 Jan 2010 21:17:18 -0000	1.6
@@ -1,78 +1,84 @@
 #!/bin/tcsh
 source `which qaConfig.csh`
 
 ################################
 #  10-12-04
 #  gets the names of all tables from an RR database
 #  using mark's genbank dumps.
 #
 #  Robert Kuhn
 ################################
 
 set database=""
 set rootpath="/cluster/data/genbank/var/tblstats"  # mark's TABLE STATUS dump
 set mach1=""
 set dirname1=""
 set machpath1=""
 set fullpath1=""
 
+set debug="true"
+set debug="false"
+
 if ($#argv != 2) then
   echo
   echo "  gets the names of all tables from an RR database"
   echo "  using mark's genbank dumps."
   echo "    warning:  not in real time.  uses overnight dump."
   echo
   echo "    usage: RRmachine database"
   echo
   exit
 else
   set mach1=$argv[1]
   set database=$argv[2]
 endif
 
 
 
 # check for valid machines
-if ($mach1 == hgwdev || $mach1 == hgwbeta) then
+if ( $mach1 == hgwdev || $mach1 == hgwbeta ) then
   echo
   echo "  this is for RR nodes only."
   echo "    usage: RRmachine, database"
   echo
   exit 1
 else 
-  set machpath1=$rootpath/$mach1
+  echo $mach1 | egrep "hgw1|hgw2|hgw3|hgw4|hgw5|hgw6|hgw7|hgw8|rr|mysqlrr" \
+     > /dev/null
+  if ( ! $status ) then
+    set machpath1=$rootpath/hgnfs1
+  endif 
 endif
 
 if (! -e $machpath1 ) then
   echo
   echo "  $mach1 is not a valid machine"
   echo
   exit 1
 endif
 
 # set paths to stored TABLE STATUS dumps
 set dirname1=`ls -ogtr $machpath1 | tail -1 | gawk '{print $7}'`
 set fullpath1=$machpath1/$dirname1
 
-set debug="false"
 if ($debug == "true") then
   echo
   echo "mach1     $mach1"
   echo
   echo "machpath1 $machpath1"
   echo "dirname1  $dirname1"
   echo "fullpath1 $fullpath1"
   echo
   # exit
 endif
 
 # get the tablenames from Mark's TABLE STATUS dump
 if (! -e $fullpath1/$database.tbls) then
   echo
   echo "  $database is not a valid database on $mach1"
   echo
 else
   cat $fullpath1/$database.tbls | grep -v "Name" | \
       gawk '{print $1}' | sort
 endif