src/hg/lib/pgSnp.c 1.7

Index: src/hg/lib/pgSnp.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/lib/pgSnp.c,v
retrieving revision 1.6
retrieving revision 1.7
diff -b -B -U 4 -r1.6 -r1.7
--- src/hg/lib/pgSnp.c	3 Sep 2008 19:19:26 -0000	1.6
+++ src/hg/lib/pgSnp.c	22 Jan 2010 23:44:59 -0000	1.7
@@ -395,9 +395,8 @@
 struct sqlConnection *conn = hAllocConn(db);
 safef(query, sizeof(query), "select chrom, txStart, txEnd, name, 0, strand, cdsStart, cdsEnd, 0, exonCount, exonEnds, exonStarts  from knownGene where chrom = '%s' and cdsStart <= %d and cdsEnd >= %d",
    item->chrom, item->chromStart, item->chromEnd);
 
-printf("\n<BR>Coding sequence changes shown in strand matching transcript<BR>\n");
 sr = sqlGetResult(conn, query);
 while ((row = sqlNextRow(sr)) != NULL)
     {
     el = bedLoad12(row);
@@ -420,8 +419,10 @@
     {
     struct pgCodon *cod = fetchCodons(db, el, item->chromStart, item->chromEnd);
     if (cod == NULL) 
         continue; /* not in exon */
+    if (found == 0)
+	printf("\n<BR>Coding sequence changes are relative to strand of transcript:<BR>\n");
     found++;
     if (sameString(el->strand, "-")) 
         reverseComplement(cod->seq, strlen(cod->seq)); 
     /* bold changing seq */
@@ -479,10 +480,8 @@
                 }
             }
         }
     }
-if (!found)
-    printf("None found<BR>\n");
 bedFreeList(&list);
 }
 
 char *aaPolarity (char *aa)