src/hg/makeDb/trackDb/README 1.101

Index: src/hg/makeDb/trackDb/README
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/README,v
retrieving revision 1.100
retrieving revision 1.101
diff -b -B -U 4 -r1.100 -r1.101
--- src/hg/makeDb/trackDb/README	4 Feb 2010 01:06:13 -0000	1.100
+++ src/hg/makeDb/trackDb/README	16 Feb 2010 20:23:54 -0000	1.101
@@ -585,9 +585,9 @@
 ================
 Tracks that are somehow related can be grouped in a single "composite track",
 using the "compositeTrack on" setting.  The track name for the
 composite track is a placeholder, that is referenced in entries for the
-subtracks.  The subtracks have a "subTrack" setting that references
+subtracks.  The subtracks have a "parent" setting that references
 the composite track name.  The composite track entry contains all
 normal settings for the common track type if there is one.
 
 The subtrack track entries need contain only the short and long labels,
@@ -711,33 +711,33 @@
 
        track sigViewTrack
        view Sig
        shortLabel Signal Densities
-       subTrack compositeParent
+       parent compositeParent
 
            track brainSignalTrack
 	   shortLabel Signals in Brain
-	   subTrack sigViewTrack
+	   parent sigViewTrack
 	   subGroup view=Sig
 
 	   track liverSignalTrack
 	   shortLabe Signals in Liver
-	   subTrack sigViewTrack
+	   parent sigViewTrack
 	   subGroup view=Sig
      
        track alnViewTrack
        view Aln
        shortLabel Alignments
-       subTrack compositeParent
+       parent compositeParent
 
            track brainAlignmentTrack
 	   shortLabel Signals in Brain
-	   subTrack alnViewTrack
+	   parent alnViewTrack
 	   subGroup view=Aln
 
 	   track liverAlignmentTrack
 	   shortLabe Signals in Liver
-	   subTrack alnViewTrack
+	   parent alnViewTrack
 	   subGroup view=Aln
      
 Note that the view level track needs to have a view tag.  There is some redundancy between 
 information in the view track and the subGroup tag of the composite parent.  Apologies.  This
@@ -891,14 +891,14 @@
     track broadChromatinChIPSeqViewHmm
     shortLabel Sites-HMM
     view Hmm
     visibility pack
-    subTrack broadChromatinChIPSeq
+    parent broadChromatinChIPSeq
 
         track broadStemChipHmmSitesH3K4me3Es
         shortLabel H3K4me3-ES HMM
         longLabel Broad Stem Cell Chromatin IP Sites by HMM (H3K4me3 ab, Embryonic Stem (ES) cells)
-        subTrack broadChromatinChIPSeqViewHmm
+        parent broadChromatinChIPSeqViewHmm
         subGroups factor=K04 cellType=ES view=Hmm
         type bed 3
         color 25,25,150
         configurable on
@@ -908,14 +908,14 @@
     shortLabel Sites Windowing
     view Win
     viewUi on
     visibility pack
-    subTrack broadChromatinChIPSeq
+    parent broadChromatinChIPSeq
 
         track broadStemChipWinSitesH3K4me3Es
         shortLabel H3K4me3-ES Win
         longLabel Broad Stem Cell Chromatin IP Sites by Windowing (H3K4me3 ab, Embryonic Stem (ES) cells)
-        subTrack broadChromatinChIPSeqViewWin
+        parent broadChromatinChIPSeqViewWin
         subGroups factor=K04 cellType=ES view=Win
         type bed 5 +
         useScore 1
         color 25,25,150
@@ -925,14 +925,14 @@
     track broadChromatinChIPSeqViewSig
     shortLabel Signal Densities
     view Sig
     visibility full
-    subTrack broadChromatinChIPSeq
+    parent broadChromatinChIPSeq
 
         track broadStemChipSignalH3K4Es
         shortLabel H3K4me3-ES Sig
         longLabel Broad Stem Cell Chromatin IP Signal (H3K4me3 ab, Embryonic Stem (ES) cells)
-        subTrack broadChromatinChIPSeqViewSig
+        parent broadChromatinChIPSeqViewSig
         subGroups factor=K04 cellType=ES view=Sig
         type wig 0 35
         yLineOnOff On
         yLineMark 1.0
@@ -942,14 +942,14 @@
     track broadChromatinChIPSeqViewAln
     shortLabel Sites Alignments
     view Aln
     visibility hide
-    subTrack broadChromatinChIPSeq
+    parent broadChromatinChIPSeq
 
         track broadStemChipAlignmentsH3K4Me3Es
         shortLabel H3K4me3-ES Align
         longLabel Broad Stem Cell Chromatin IP Alignments (H3K4me3 ab, Embryonic Stem (ES) cells)
-        subTrack broadChromatinChIPSeqViewAln
+        parent broadChromatinChIPSeqViewAln
         subGroups factor=K04 cellType=ES view=Aln
         type bed 9 +
         useScore 1
         metadata project=wgEncode grant=Bernstein lab=Broad dataType=ChipSeq cell=M9ES antibody=H3K4me3 softwareVersion="Maq v2.1, unique, mismatch<=2"