src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.63

Index: src/hg/makeDb/trackDb/trackDb.chainNet.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.chainNet.ra,v
retrieving revision 1.62
retrieving revision 1.63
diff -b -B -U 4 -r1.62 -r1.63
--- src/hg/makeDb/trackDb/trackDb.chainNet.ra	4 Feb 2010 06:18:23 -0000	1.62
+++ src/hg/makeDb/trackDb/trackDb.chainNet.ra	4 Feb 2010 21:22:09 -0000	1.63
@@ -1,6 +1,55 @@
 #	"$Id$";
 
+track chainNetAplCal1
+compositeTrack on
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+group compGeno
+noInherit on
+priority 655.3
+color 0,0,0
+altColor 255,255,0
+type bed 3
+sortOrder view=+
+matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
+matrixHeader A, C, G, T
+otherDb aplCal1
+chainMinScore 5000
+chainLinearGap loose
+spectrum on
+html chainNet
+
+    track chainNetAplCal1Viewchain
+    shortLabel Chain
+    view chain
+    visibility pack
+    subTrack chainNetAplCal1
+    spectrum on
+
+        track chainAplCal1
+        subTrack chainNetAplCal1Viewchain
+        subGroups view=chain
+        shortLabel $o_Organism Chain
+        longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+        type chain aplCal1
+
+    track chainNetAplCal1Viewnet
+    shortLabel Net
+    view net
+    visibility dense
+    subTrack chainNetAplCal1
+
+        track netAplCal1
+        subTrack chainNetAplCal1Viewnet
+        subGroups view=net
+        shortLabel $o_Organism Net
+        longLabel $o_Organism ($o_date/$o_db) Alignment Net
+        type netAlign aplCal1 chainAplCal1
+
 # release alpha until individual fr2 tracks are obsolete
 track chainNetFr2
 release alpha
 compositeTrack on