src/inc/bigBed.h 1.18
1.18 2010/02/06 19:58:26 kent
Removing bigBedFileCreate which is no longer in library.
Index: src/inc/bigBed.h
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/inc/bigBed.h,v
retrieving revision 1.17
retrieving revision 1.18
diff -b -B -U 4 -r1.17 -r1.18
--- src/inc/bigBed.h 10 Nov 2009 05:45:47 -0000 1.17
+++ src/inc/bigBed.h 6 Feb 2010 19:58:26 -0000 1.18
@@ -67,36 +67,6 @@
struct asObject *bigBedAs(struct bbiFile *bbi);
/* Get autoSql object definition if any associated with file. */
-void bigBedFileCreate(
- char *inName, /* Input file in a tabular bed format <chrom><start><end> + whatever. */
- char *chromSizes, /* Two column tab-separated file: <chromosome> <size>. */
- int blockSize, /* Number of items to bundle in r-tree. 1024 is good. */
- int itemsPerSlot, /* Number of items in lowest level of tree. 64 is good. */
- bits16 definedFieldCount, /* Number of defined bed fields - 3-16 or so. 0 means all fields
- * are the defined bed ones. */
- char *asFileName, /* If non-null points to a .as file that describes fields. */
- boolean clip, /* If set silently clip out of bound coordinates. */
- char *outName); /* BigBed output file name. */
-/* Convert tab-separated bed file to binary indexed, zoomed bigBed version. */
-
-void bigBedFileCreateDetailed(
- struct ppBed *pbList, /* Input bed data. Must be sorted. */
- bits64 pbCount, /* size of input pbList */
- double pbAverageSize, /* average size of elements in pbList */
- char *inName, /* Input file name (for error message reporting) */
- struct hash *chromHash, /* Hash containing sizes of all chroms. */
- int blockSize, /* Number of items to bundle in r-tree. 1024 is good. */
- int itemsPerSlot, /* Number of items in lowest level of tree. 64 is good. */
- bits16 definedFieldCount, /* Number of defined bed fields - 3-16 or so. 0 means all fields
- * are the defined bed ones. */
- bits16 fieldCount, /* actual field count from input data. */
- char *asFileName, /* If non-null points to a .as file that describes fields. */
- struct asObject *as, /* If non-null contains as object that describes fields. */
- bits64 fullSize, /* full size of ppBed on disk */
- char *outName); /* BigBed output file name. */
-/* create zoomed bigBed version from ppBed list. */
-
-
#endif /* BIGBED_H */