src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.75
1.75 2010/02/08 02:26:00 kuhn
moved all danRer1 chains and nets to composite and dropped individual tracks
Index: src/hg/makeDb/trackDb/trackDb.chainNet.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.chainNet.ra,v
retrieving revision 1.74
retrieving revision 1.75
diff -b -B -U 1000000 -r1.74 -r1.75
--- src/hg/makeDb/trackDb/trackDb.chainNet.ra 7 Feb 2010 06:50:00 -0000 1.74
+++ src/hg/makeDb/trackDb/trackDb.chainNet.ra 8 Feb 2010 02:26:00 -0000 1.75
@@ -1,3435 +1,3428 @@
# "$Id$";
track chainNetAplCal1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 655.3
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb aplCal1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetAplCal1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetAplCal1
spectrum on
track chainAplCal1
subTrack chainNetAplCal1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain aplCal1
track chainNetAplCal1Viewnet
shortLabel Net
view net
visibility dense
subTrack chainNetAplCal1
track netAplCal1
subTrack chainNetAplCal1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign aplCal1 chainAplCal1
-# release alpha until individual fr2 tracks are obsolete
track chainNetFr2
-release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb fr2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetFr2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetFr2
spectrum on
track chainFr2
- release alpha
subTrack chainNetFr2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain fr2
track chainNetFr2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetFr2
track netFr2
- release alpha
subTrack chainNetFr2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign fr2 chainFr2
track chainNetFr1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb fr1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetFr1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetFr1
spectrum on
track chainFr1
subTrack chainNetFr1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain fr1
track chainNetFr1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetFr1
track netFr1
subTrack chainNetFr1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign fr1 chainFr1
track chainNetTetNig2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb tetNig2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetTetNig2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetTetNig2
spectrum on
track chainTetNig2
subTrack chainNetTetNig2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain tetNig2
track chainNetTetNig2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetTetNig2
track netTetNig2
subTrack chainNetTetNig2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign tetNig2 chainTetNig2
track chainNetTetNig1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb tetNig1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetTetNig1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetTetNig1
spectrum on
track chainTetNig1
subTrack chainNetTetNig1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain tetNig1
track chainNetTetNig1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetTetNig1
track netTetNig1
subTrack chainNetTetNig1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign tetNig1 chainTetNig1
track chainNetDanRer6
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer6
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer6Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetDanRer6
spectrum on
track chainDanRer6
subTrack chainNetDanRer6Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain danRer6
track chainNetDanRer6Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetDanRer6
track netDanRer6
subTrack chainNetDanRer6Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign danRer6 chainDanRer6
track chainNetDanRer5
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer5
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer5Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetDanRer5
spectrum on
track chainDanRer5
release alpha
subTrack chainNetDanRer5Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain danRer5
track chainNetDanRer5Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetDanRer5
track netDanRer5
release alpha
subTrack chainNetDanRer5Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign danRer5 chainDanRer5
track chainNetDanRer4
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer4
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer4Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetDanRer4
spectrum on
track chainDanRer4
release alpha
subTrack chainNetDanRer4Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain danRer4
track chainNetDanRer4Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetDanRer4
track netDanRer4
release alpha
subTrack chainNetDanRer4Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign danRer4 chainDanRer4
track chainNetDanRer3
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer3
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer3Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetDanRer3
spectrum on
track chainDanRer3
release alpha
subTrack chainNetDanRer3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain danRer3
track chainNetDanRer3Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetDanRer3
track netDanRer3
release alpha
subTrack chainNetDanRer3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign danRer3 chainDanRer3
track chainNetDanRer2
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetDanRer2
spectrum on
track chainDanRer2
release alpha
subTrack chainNetDanRer2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain danRer2
track chainNetDanRer2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetDanRer2
track netDanRer2
release alpha
subTrack chainNetDanRer2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign danRer2 chainDanRer2
track chainNetDanRer1
-release alpha
compositeTrack on
-shortLabel $o_db Chain/Net
+shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetDanRer1
spectrum on
track chainDanRer1
- release alpha
subTrack chainNetDanRer1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain danRer1
track chainNetDanRer1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetDanRer1
track netDanRer1
- release alpha
subTrack chainNetDanRer1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign danRer1 chainDanRer1
track chainNetXenTro2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb xenTro2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetXenTro2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetXenTro2
spectrum on
track chainXenTro2
subTrack chainNetXenTro2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain xenTro2
track chainNetXenTro2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetXenTro2
track netXenTro2
subTrack chainNetXenTro2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign xenTro2 chainXenTro2
track chainNetXenTro1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb xenTro1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetXenTro1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetXenTro1
spectrum on
track chainXenTro1
subTrack chainNetXenTro1Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain xenTro1
track chainNetXenTro1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetXenTro1
track netXenTro1
subTrack chainNetXenTro1Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign xenTro1 chainXenTro1
track chainNetOryLat2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 165.5
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb oryLat2
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetOryLat2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetOryLat2
spectrum on
track chainOryLat2
subTrack chainNetOryLat2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain oryLat2
otherDb oryLat2
track chainNetOryLat2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetOryLat2
track netOryLat2
subTrack chainNetOryLat2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign oryLat2 chainOryLat2
otherDb oryLat2
# release alpha since oryLat1 is obsolete
track chainNetOryLat1
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 165.5
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb oryLat1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetOryLat1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetOryLat1
spectrum on
track chainOryLat1
release alpha
subTrack chainNetOryLat1Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain oryLat1
otherDb oryLat1
track chainNetOryLat1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetOryLat1
track netOryLat1
release alpha
subTrack chainNetOryLat1Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign oryLat1 chainOryLat1
otherDb oryLat1
track chainNetGasAcu1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb gasAcu1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetGasAcu1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetGasAcu1
spectrum on
track chainGasAcu1
subTrack chainNetGasAcu1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain gasAcu1
track chainNetGasAcu1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetGasAcu1
track netGasAcu1
subTrack chainNetGasAcu1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign gasAcu1 chainGasAcu1
track chainNetGalGal3
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb galGal3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetGalGal3Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetGalGal3
spectrum on
track chainGalGal3
subTrack chainNetGalGal3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain galGal3
track chainNetGalGal3Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetGalGal3
track netGalGal3
subTrack chainNetGalGal3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign galGal3 chainGalGal3
track chainNetGalGal2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb galGal2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetGalGal2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetGalGal2
spectrum on
track chainGalGal2
subTrack chainNetGalGal2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain galGal2
track chainNetGalGal2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetGalGal2
track netGalGal2
subTrack chainNetGalGal2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign galGal2 chainGalGal2
track chainNetTaeGut1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb taeGut1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetTaeGut1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetTaeGut1
spectrum on
track chainTaeGut1
subTrack chainNetTaeGut1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain taeGut1
track chainNetTaeGut1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetTaeGut1
track netTaeGut1
subTrack chainNetTaeGut1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign taeGut1 chainTaeGut1
track chainNetOrnAna1
compositeTrack on
shortLabel $o_Organism Chain/Net
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track chainNetOrnAna1Viewchain
shortLabel Chain
view chain
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subTrack chainNetOrnAna1
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track chainOrnAna1
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track chainNetAnoCar1Viewchain
shortLabel Chain
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subTrack chainNetAnoCar1
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track chainAnoCar1
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track chainNetPetMar1Viewchain
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subTrack chainNetPetMar1
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track chainPetMar1
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track netPetMar1
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track chainNetBraFlo1Viewchain
shortLabel Chain
view chain
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track netBraFlo1
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track chainMacEug1
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track chainNetLoxAfr3Viewchain
shortLabel Chain
view chain
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subTrack chainNetLoxAfr3
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track chainLoxAfr3
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track netLoxAfr3
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track chainNetLoxAfr2Viewchain
shortLabel Chain
view chain
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track chainLoxAfr2
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track netLoxAfr2
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track chainNetLoxAfr1Viewchain
shortLabel Chain
view chain
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subTrack chainNetLoxAfr1
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track chainLoxAfr1
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track netLoxAfr1
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track chainNetMonDom1Viewchain
shortLabel Chain
view chain
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subTrack chainNetMonDom1
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track chainMonDom1
subTrack chainNetMonDom1Viewchain
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track netMonDom1
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track chainNetMonDom4Viewchain
shortLabel Chain
view chain
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spectrum on
track chainMonDom4
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track netMonDom4
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track chainNetMonDom5Viewchain
shortLabel Chain
view chain
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subTrack chainNetMonDom5
spectrum on
track chainMonDom5
subTrack chainNetMonDom5Viewchain
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track netMonDom5
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spectrum on
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track chainNetEriEur1Viewchain
shortLabel Chain
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subTrack chainNetEriEur1
spectrum on
track chainEriEur1
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track netEriEur1
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track chainNetSorAra1Viewchain
shortLabel Chain
view chain
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subTrack chainNetSorAra1
spectrum on
track chainSorAra1
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track netSorAra1
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track chainNetMm9Viewchain
shortLabel Chain
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spectrum on
track chainMm9
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track chainNetMm8Viewchain
shortLabel Chain
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track chainMm8
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track chainNetMm7Viewchain
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track chainMm7
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track chainNetMm6Viewchain
shortLabel Chain
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track chainMm6
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track chainMm5
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track chainNetRn4Viewchain
shortLabel Chain
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spectrum on
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track chainNetCavPor3Viewchain
shortLabel Chain
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subTrack chainNetCavPor3
spectrum on
track chainCavPor3
subTrack chainNetCavPor3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain cavPor3
track chainNetCavPor3Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetCavPor3
track netCavPor3
subTrack chainNetCavPor3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign cavPor3 chainCavPor3
# release alpha until cavPor2 individual chain/net tracks phased out
track chainNetCavPor2
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb cavPor2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetCavPor2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetCavPor2
spectrum on
track chainCavPor2
release alpha
subTrack chainNetCavPor2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain cavPor2
track chainNetCavPor2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetCavPor2
track netCavPor2
release alpha
subTrack chainNetCavPor2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign cavPor2 chainCavPor2
track chainNetOryCun2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb oryCun2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetOryCun2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetOryCun2
spectrum on
track chainOryCun2
subTrack chainNetOryCun2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain oryCun2
track chainNetOryCun2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetOryCun2
track netOryCun2
subTrack chainNetOryCun2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign oryCun2 chainOryCun2
track chainNetOryCun1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb oryCun1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetOryCun1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetOryCun1
spectrum on
track chainOryCun1
subTrack chainNetOryCun1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain oryCun1
track chainNetOryCun1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetOryCun1
track netOryCun1
subTrack chainNetOryCun1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign oryCun1 chainOryCun1
track chainNetEquCab2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb equCab2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetEquCab2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetEquCab2
spectrum on
track chainEquCab2
subTrack chainNetEquCab2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain equCab2
track chainNetEquCab2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetEquCab2
track netEquCab2
subTrack chainNetEquCab2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign equCab2 chainEquCab2
track chainNetEquCab1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb equCab1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetEquCab1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetEquCab1
spectrum on
track chainEquCab1
subTrack chainNetEquCab1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain equCab1
track chainNetEquCab1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetEquCab1
track netEquCab1
subTrack chainNetEquCab1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign equCab1 chainEquCab1
track chainNetEchTel1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb echTel1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetEchTel1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetEchTel1
spectrum on
track chainEchTel1
subTrack chainNetEchTel1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain echTel1
track chainNetEchTel1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetEchTel1
track netEchTel1
subTrack chainNetEchTel1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign echTel1 chainEchTel1
track chainNetDasNov2
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb dasNov2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetDasNov2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetDasNov2
spectrum on
track chainDasNov2
subTrack chainNetDasNov2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain dasNov2
track chainNetDasNov2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetDasNov2
track netDasNov2
subTrack chainNetDasNov2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign dasNov2 chainDasNov2
track chainNetDasNov1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb dasNov1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetDasNov1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetDasNov1
spectrum on
track chainDasNov1
subTrack chainNetDasNov1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain dasNov1
track chainNetDasNov1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetDasNov1
track netDasNov1
subTrack chainNetDasNov1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign dasNov1 chainDasNov1
track chainNetSusScr1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 475.3
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb susScr1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetSusScr1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetSusScr1
spectrum on
track chainSusScr1
subTrack chainNetSusScr1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain susScr1
track chainNetSusScr1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetSusScr1
track netSusScr1
subTrack chainNetSusScr1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign susScr1 chainSusScr1
track chainNetBosTau4
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb bosTau4
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetBosTau4Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetBosTau4
spectrum on
track chainBosTau4
subTrack chainNetBosTau4Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain bosTau4
track chainNetBosTau4Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetBosTau4
track netBosTau4
subTrack chainNetBosTau4Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign bosTau4 chainBosTau4
track chainNetBosTau3
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb bosTau3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetBosTau3Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetBosTau3
spectrum on
track chainBosTau3
subTrack chainNetBosTau3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain bosTau3
track chainNetBosTau3Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetBosTau3
track netBosTau3
subTrack chainNetBosTau3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign bosTau3 chainBosTau3
track chainNetBosTau2
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb bosTau2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetBosTau2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetBosTau2
spectrum on
track chainBosTau2
subTrack chainNetBosTau2Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain bosTau2
track chainNetBosTau2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetBosTau2
track netBosTau2
subTrack chainNetBosTau2Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign bosTau2 chainBosTau2
track chainNetBosTau1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb bosTau1
chainMinScore 1000
chainLinearGap loose
spectrum on
html chainNet
track chainNetBosTau1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetBosTau1
spectrum on
track chainBosTau1
subTrack chainNetBosTau1Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain bosTau1
track chainNetBosTau1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetBosTau1
track netBosTau1
subTrack chainNetBosTau1Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign bosTau1 chainBosTau1
track chainNetAilMel1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 415.3
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb ailMel1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetAilMel1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetAilMel1
spectrum on
track chainAilMel1
subTrack chainNetAilMel1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain ailMel1
track chainNetAilMel1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetAilMel1
track netAilMel1
subTrack chainNetAilMel1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign ailMel1 chainAilMel1
track chainNetCanFam2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb canFam2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetCanFam2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetCanFam2
spectrum on
track chainCanFam2
subTrack chainNetCanFam2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain canFam2
track chainNetCanFam2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetCanFam2
track netCanFam2
subTrack chainNetCanFam2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign canFam2 chainCanFam2
# release alpha until felCat3 individual tracks phased out
track chainNetFelCat3
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb felCat3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetFelCat3Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetFelCat3
spectrum on
track chainFelCat3
subTrack chainNetFelCat3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain felCat3
track chainNetFelCat3Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetFelCat3
track netFelCat3
subTrack chainNetFelCat3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign felCat3 chainFelCat3
track chainNetVenter
compositeTrack on
shortLabel Venter Chain/Net
longLabel J. Craig Venter Chain and Net Alignments
subGroup1 view Views chain=Chains net=Nets
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 500
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
track chainNetVenterViewchain
shortLabel Chains
view chain
visibility pack
subTrack chainNetVenter
spectrum on
track chainVenter1
subTrack chainNetVenterViewchain off
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
color 0,0,0
altColor 100,50,0
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
type chain venter1
otherDb venter1
track chainNetVenterViewnet
shortLabel Nets
view net
visibility full
subTrack chainNetVenter
track netVenter1
subTrack chainNetVenterViewnet off
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign venter1 chainVenter1
otherDb venter1
track chainNetHg18
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb hg18
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetHg18Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetHg18
spectrum on
track chainHg18
release alpha
subTrack chainNetHg18Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain hg18
track chainNetHg18Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetHg18
track netHg18
release alpha
subTrack chainNetHg18Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign hg18 chainHg18
track chainNetHg19
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb hg19
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetHg19Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetHg19
spectrum on
track chainHg19
subTrack chainNetHg19Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain hg19
track chainNetHg19Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetHg19
track netHg19
subTrack chainNetHg19Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign hg19 chainHg19
track chainNetHg17
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb hg17
chainMinScore 1000
chainLinearGap loose
html chainNet
track chainNetHg17Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetHg17
spectrum on
track chainHg17
release alpha
subTrack chainNetHg17Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain hg17
track chainNetHg17Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetHg17
track netHg17
release alpha
subTrack chainNetHg17Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign hg17 chainHg17
track chainNetPanTro2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb panTro2
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetPanTro2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetPanTro2
spectrum on
track chainPanTro2
subTrack chainNetPanTro2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain panTro2
track chainNetPanTro2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetPanTro2
track netPanTro2
subTrack chainNetPanTro2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign panTro2 chainPanTro2
track chainNetPanTro1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb panTro1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetPanTro1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetPanTro1
spectrum on
track chainPanTro1
subTrack chainNetPanTro1Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain panTro1
track chainNetPanTro1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetPanTro1
track netPanTro1
subTrack chainNetPanTro1Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign panTro1 chainPanTro1
track chainNetGorGor1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb gorGor1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetGorGor1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetGorGor1
spectrum on
track chainGorGor1
subTrack chainNetGorGor1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain gorGor1
track chainNetGorGor1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetGorGor1
track netGorGor1
subTrack chainNetGorGor1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign gorGor1 chainGorGor1
track chainNetPonAbe2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb ponAbe2
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetPonAbe2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetPonAbe2
spectrum on
track chainPonAbe2
subTrack chainNetPonAbe2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain ponAbe2
track chainNetPonAbe2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetPonAbe2
track netPonAbe2
subTrack chainNetPonAbe2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign ponAbe2 chainPonAbe2
track chainNetTupBel1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb tupBel1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetTupBel1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetTupBel1
spectrum on
track chainTupBel1
subTrack chainNetTupBel1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain tupBel1
track chainNetTupBel1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetTupBel1
track netTupBel1
subTrack chainNetTupBel1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign tupBel1 chainTupBel1
track chainNetOtoGar1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb otoGar1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetOtoGar1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetOtoGar1
spectrum on
track chainOtoGar1
subTrack chainNetOtoGar1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain otoGar1
track chainNetOtoGar1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetOtoGar1
track netOtoGar1
subTrack chainNetOtoGar1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign otoGar1 chainOtoGar1
track chainNetCalJac1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb calJac1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetCalJac1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetCalJac1
spectrum on
track chainCalJac1
subTrack chainNetCalJac1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain calJac1
track chainNetCalJac1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetCalJac1
track netCalJac1
subTrack chainNetCalJac1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign calJac1 chainCalJac1
track chainNetRheMac2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb rheMac2
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetRheMac2Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetRheMac2
spectrum on
track chainRheMac2
subTrack chainNetRheMac2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain rheMac2
track chainNetRheMac2Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetRheMac2
track netRheMac2
subTrack chainNetRheMac2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign rheMac2 chainRheMac2
track chainNetRheMac1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb rheMac1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetRheMac1Viewchain
shortLabel Chain
view chain
visibility pack
subTrack chainNetRheMac1
spectrum on
track chainRheMac1
subTrack chainNetRheMac1Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain rheMac1
track chainNetRheMac1Viewnet
shortLabel Net
view net
visibility full
subTrack chainNetRheMac1
track netRheMac1
subTrack chainNetRheMac1Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign rheMac1 chainRheMac1
track chainNetPoodle
compositeTrack on
shortLabel Poodle Chain/Net
longLabel Poodle Chain and Net Alignments
subGroup1 view Views chain=Chains net=Nets
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 500
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
track chainNetPoodleViewchain
shortLabel Chains
view chain
visibility pack
subTrack chainNetPoodle
spectrum on
track chainCanFamPoodle1
subTrack chainNetPoodleViewchain off
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
color 0,0,0
altColor 100,50,0
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
type chain canFamPoodle1
otherDb canFamPoodle1
track chainNetPoodleViewnet
shortLabel Nets
view net
visibility full
subTrack chainNetPoodle
track netCanFamPoodle1
subTrack chainNetPoodleViewnet off
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign canFamPoodle1 chainCanFamPoodle1
otherDb canFamPoodle1