angie: changes by commit

branch to review (2010-02-02 to 2010-02-10) v225

• Increased some char[] sizes that caused safef errors with custom track with name longer than 128, and some others that looked like they might.
  • src/hg/hgCustom/hgCustom.c 1.137 - lines changed: 4, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c 1.1621 - lines changed: 10, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.c 1.20 - lines changed: 4, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c 1.123 - lines changed: 3, context: html, text, full: html, text
• Long since obsoleted by composite track details (pgSnp.html). thx Pauline!
  • src/hg/makeDb/trackDb/human/hg18/pgVenter.html 1.2 - lines changed: 31, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/pgWatson.html 1.2 - lines changed: 29, context: html, text, full: html, text
• pgSnpDrawAt: removed the ceiling of 50 items for drawing the cool stacked colored bars -- performance is just fine, and display snaps into squish/dense anyway when there are thousands of items.
  • src/hg/hgTracks/simpleTracks.c 1.124 - lines changed: 2, context: html, text, full: html, text
• pgSnpHeight: if we're in dense mode, no need to double the track height.
  • src/hg/hgTracks/simpleTracks.c 1.125 - lines changed: 3, context: html, text, full: html, text
• Fixed too-small char[] size, found by Ann w/ENCODE tracks w/giant names, RT 1621.
  • src/hg/hgTables/gffOut.c 1.19 - lines changed: 1, context: html, text, full: html, text
• Removed stray newline from tx IDs generated for tracks that have no name column.
  • src/hg/hgTables/gffOut.c 1.20 - lines changed: 3, context: html, text, full: html, text
• If the result of 'hFreezeName' (dbDb.description) contains the database name, as I intend to make happen, don't also show the database name in parens.
  • src/hg/hgTracks/config.c 1.90 - lines changed: 7, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c 1.1623 - lines changed: 11, context: html, text, full: html, text
  • src/hg/lib/hgFind.c 1.223 - lines changed: 7, context: html, text, full: html, text
  • src/hg/lib/trackDbCustom.c 1.79 - lines changed: 8, context: html, text, full: html, text
• Added hook for specifying a search type: CGI var (not cart) singleSearch=knownCanonical (and maybe other types someday). This will support stable links to hgTracks views of gene symbols short-circuited to knownCanonical locations.
  • src/hg/lib/hgFind.c 1.224 - lines changed: 54, context: html, text, full: html, text
• Suppress the '[db]' if db is contained in assembly label (dbDb.description). (Thx Ann!)
  • src/hg/hgCustom/hgCustom.c 1.138 - lines changed: 3, context: html, text, full: html, text