rhead: changes by file

branch to review (2010-02-02 to 2010-02-10) v225

• src/hg/makeDb/trackDb/trackDb.chainNet.ra
  • 1.78 lines changed: 3, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
  • 1.77 lines changed: 3, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
  • 1.59 lines changed: 1, context: html, text, full: html, text
    Removed a stray release alpha from netMm7 track.
• src/hg/makeDb/trackDb/trackDb.ra
  • 1.615 lines changed: 24, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
  • 1.614 lines changed: 26, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/cat/trackDb.chainNet.ra
  • 1.6 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/cat/trackDb.ra
  • 1.11 lines changed: 28, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/cat/felCat3/trackDb.ra
  • 1.27 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra
  • 1.22 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/chicken/galGal2/trackDb.chainNet.ra
  • 1.8 lines changed: 6, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
  • 1.7 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/chicken/galGal2/trackDb.ra
  • 1.78 lines changed: 6, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
• src/hg/makeDb/trackDb/chicken/galGal3/trackDb.ra
  • 1.22 lines changed: 8, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/chimp/trackDb.chainNet.ra
  • 1.14 lines changed: 9, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
  • 1.13 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/chimp/trackDb.ra
  • 1.35 lines changed: 6, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
  • 1.34 lines changed: 28, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/chimp/panTro1/trackDb.chainNet.ra
  • 1.5 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/chimp/panTro2/trackDb.ra
  • 1.54 lines changed: 10, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/cow/trackDb.chainNet.ra
  • 1.11 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/cow/trackDb.ra
  • 1.7 lines changed: 7, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/cow/bosTau1/trackDb.ra
  • 1.20 lines changed: 9, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
• src/hg/makeDb/trackDb/cow/bosTau2/trackDb.chainNet.ra
  • 1.6 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/cow/bosTau2/trackDb.ra
  • 1.11 lines changed: 18, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/cow/bosTau3/trackDb.chainNet.ra
  • 1.4 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/cow/bosTau4/trackDb.chainNet.ra
  • 1.2 lines changed: 8, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/cow/bosTau4/trackDb.ra
  • 1.22 lines changed: 9, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra
  • 1.18 lines changed: 6, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
  • 1.17 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/dog/trackDb.ra
  • 1.45 lines changed: 6, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
  • 1.44 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/dog/canFam1/trackDb.chainNet.ra
  • 1.5 lines changed: 6, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
• src/hg/makeDb/trackDb/dog/canFam1/trackDb.ra
  • 1.40 lines changed: 22, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
• src/hg/makeDb/trackDb/dog/canFam2/trackDb.ra
  • 1.49 lines changed: 8, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/drosophila/dm2/trackDb.ra
  • 1.60 lines changed: 3, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/fugu/trackDb.ra
  • 1.77 lines changed: 26, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/fugu/fr2/trackDb.chainNet.ra
  • 1.2 lines changed: 7, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/guineaPig/trackDb.chainNet.ra
  • 1.7 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/guineaPig/cavPor3/trackDb.ra
  • 1.11 lines changed: 9, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/horse/trackDb.chainNet.ra
  • 1.9 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/horse/trackDb.ra
  • 1.26 lines changed: 16, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/horse/equCab1/trackDb.chainNet.ra
  • 1.4 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/human/trackDb.ra
  • 1.511 lines changed: 6, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
  • 1.510 lines changed: 13, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/human/hg17/trackDb.chainNet.ra
  • 1.18 lines changed: 6, context: html, text, full: html, text
    Changed xenTro1 chain and net shortLabels to match chainNet shortLabels.
• src/hg/makeDb/trackDb/lamprey/trackDb.chainNet.ra
  • 1.5 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/lamprey/trackDb.ra
  • 1.8 lines changed: 8, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/lizard/trackDb.chainNet.ra
  • 1.8 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/lizard/trackDb.ra
  • 1.10 lines changed: 7, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/marmoset/trackDb.ra
  • 1.13 lines changed: 12, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/medaka/trackDb.chainNet.ra
  • 1.8 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/medaka/trackDb.ra
  • 1.27 lines changed: 28, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/medaka/oryLat1/trackDb.chainNet.ra
  • 1.1 lines changed: 11, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/medaka/oryLat1/trackDb.ra
  • 1.14 lines changed: 3, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra
  • 1.32 lines changed: 6, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
  • 1.31 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/mouse/trackDb.ra
  • 1.204 lines changed: 9, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
  • 1.203 lines changed: 28, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/mouse/mm6/trackDb.chainNet.ra
  • 1.1 lines changed: 11, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
• src/hg/makeDb/trackDb/mouse/mm6/trackDb.ra
  • 1.56 lines changed: 2, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
• src/hg/makeDb/trackDb/mouse/mm7/trackDb.chainNet.ra
  • 1.15 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
  • 1.14 lines changed: 6, context: html, text, full: html, text
    Changed xenTro1 chain and net shortLabels to match chainNet shortLabels.
• src/hg/makeDb/trackDb/mouse/mm7/trackDb.ra
  • 1.63 lines changed: 8, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
• src/hg/makeDb/trackDb/mouse/mm8/trackDb.chainNet.ra
  • 1.12 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/mouse/mm8/trackDb.ra
  • 1.65 lines changed: 8, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra
  • 1.79 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra
  • 1.21 lines changed: 6, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
  • 1.20 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/opossum/trackDb.ra
  • 1.50 lines changed: 7, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
  • 1.49 lines changed: 29, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/opossum/monDom1/trackDb.chainNet.ra
  • 1.6 lines changed: 8, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
• src/hg/makeDb/trackDb/opossum/monDom1/trackDb.ra
  • 1.27 lines changed: 5, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
• src/hg/makeDb/trackDb/opossum/monDom4/trackDb.chainNet.ra
  • 1.12 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/opossum/monDom4/trackDb.ra
  • 1.28 lines changed: 6, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
• src/hg/makeDb/trackDb/opossum/monDom5/trackDb.ra
  • 1.33 lines changed: 14, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/orangutan/trackDb.chainNet.ra
  • 1.10 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/orangutan/ponAbe2/trackDb.ra
  • 1.20 lines changed: 10, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/platypus/trackDb.chainNet.ra
  • 1.13 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/platypus/trackDb.ra
  • 1.15 lines changed: 9, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/rat/trackDb.chainNet.ra
  • 1.22 lines changed: 6, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
  • 1.21 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
  • 1.19 lines changed: 6, context: html, text, full: html, text
    Changed bosTau4 chain and net shortLabels to match chainNet shortLabels.
• src/hg/makeDb/trackDb/rat/trackDb.ra
  • 1.77 lines changed: 26, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
  • 1.76 lines changed: 26, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/rat/rn3/trackDb.chainNet.ra
  • 1.5 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/rat/rn3/trackDb.ra
  • 1.67 lines changed: 26, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
• src/hg/makeDb/trackDb/rat/rn4/trackDb.ra
  • 1.56 lines changed: 9, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/rhesus/trackDb.chainNet.ra
  • 1.11 lines changed: 6, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
  • 1.10 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/rhesus/rheMac1/trackDb.chainNet.ra
  • 1.1 lines changed: 11, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
• src/hg/makeDb/trackDb/rhesus/rheMac1/trackDb.ra
  • 1.9 lines changed: 11, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
• src/hg/makeDb/trackDb/rhesus/rheMac2/trackDb.ra
  • 1.53 lines changed: 12, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
• src/hg/makeDb/trackDb/stickleback/trackDb.chainNet.ra
  • 1.11 lines changed: 7, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
  • 1.9 lines changed: 1, context: html, text, full: html, text
    Fixed typo. Thanks, tdbQuery.
• src/hg/makeDb/trackDb/stickleback/trackDb.ra
  • 1.32 lines changed: 27, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/tetraodon/trackDb.chainNet.ra
  • 1.13 lines changed: 7, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
  • 1.12 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/tetraodon/trackDb.ra
  • 1.57 lines changed: 7, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
  • 1.56 lines changed: 26, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/urchin/strPur1/trackDb.ra
  • 1.10 lines changed: 24, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/xenTro/trackDb.chainNet.ra
  • 1.12 lines changed: 6, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
  • 1.11 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/xenTro/trackDb.ra
  • 1.32 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/xenTro/xenTro1/trackDb.chainNet.ra
  • 1.5 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/xenTro/xenTro1/trackDb.ra
  • 1.45 lines changed: 7, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
• src/hg/makeDb/trackDb/xenTro/xenTro2/trackDb.ra
  • 1.26 lines changed: 24, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/zebraFinch/trackDb.chainNet.ra
  • 1.3 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/zebraFinch/trackDb.ra
  • 1.10 lines changed: 8, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/zebrafish/trackDb.chainNet.ra
  • 1.16 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/zebrafish/trackDb.ra
  • 1.71 lines changed: 9, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
• src/hg/makeDb/trackDb/zebrafish/danRer1/trackDb.ra
  • 1.38 lines changed: 6, context: html, text, full: html, text
    Changing netHg17 and chainHg17 to chainNetHg17 composite tracks.
• src/hg/makeDb/trackDb/zebrafish/danRer3/trackDb.chainNet.ra
  • 1.6 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/zebrafish/danRer3/trackDb.ra
  • 1.61 lines changed: 28, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/zebrafish/danRer4/trackDb.chainNet.ra
  • 1.7 lines changed: 6, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/zebrafish/danRer4/trackDb.ra
  • 1.46 lines changed: 28, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.
• src/hg/makeDb/trackDb/zebrafish/danRer5/trackDb.ra
  • 1.32 lines changed: 10, context: html, text, full: html, text
    Changing netHg18 and chainHg18 to composites.