src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.83
1.83 2010/02/24 23:49:35 hiram
adding the new ones for calJac3 13-way
Index: src/hg/makeDb/trackDb/trackDb.chainNet.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.chainNet.ra,v
retrieving revision 1.82
retrieving revision 1.83
diff -b -B -U 4 -r1.82 -r1.83
--- src/hg/makeDb/trackDb/trackDb.chainNet.ra 17 Feb 2010 19:19:40 -0000 1.82
+++ src/hg/makeDb/trackDb/trackDb.chainNet.ra 24 Feb 2010 23:49:35 -0000 1.83
@@ -2102,9 +2102,9 @@
type netAlign oryCun2 chainOryCun2
track chainNetOryCun1
compositeTrack on
-shortLabel $o_Organism Chain/Net
+shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
@@ -2786,8 +2786,104 @@
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign felCat3 chainFelCat3
+track chainNetMicMur1
+compositeTrack on
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+group compGeno
+noInherit on
+priority 290.3
+color 0,0,0
+altColor 100,50,0
+type bed 3
+sortOrder view=+
+matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+matrixHeader A, C, G, T
+otherDb MicMur1
+chainMinScore 3000
+chainLinearGap medium
+html chainNet
+
+ track chainNetMicMur1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetMicMur1
+ spectrum on
+
+ track chainMicMur1
+ subTrack chainNetMicMur1Viewchain
+ subGroups view=chain
+ shortLabel $o_Organism Chain
+ longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+ type chain MicMur1
+
+ track chainNetMicMur1Viewnet
+ shortLabel Net
+ view net
+ visibility full
+ subTrack chainNetMicMur1
+
+ track netMicMur1
+ subTrack chainNetMicMur1Viewnet
+ subGroups view=net
+ shortLabel $o_Organism Net
+ longLabel $o_Organism ($o_date/$o_db) Alignment net
+ type netAlign MicMur1 chainMicMur1
+
+track chainNetTarSyr1
+compositeTrack on
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+group compGeno
+noInherit on
+priority 270.3
+color 0,0,0
+altColor 100,50,0
+type bed 3
+sortOrder view=+
+matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+matrixHeader A, C, G, T
+otherDb tarSyr1
+chainMinScore 3000
+chainLinearGap medium
+html chainNet
+
+ track chainNetTarSyr1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetTarSyr1
+ spectrum on
+
+ track chainTarSyr1
+ subTrack chainNetTarSyr1Viewchain
+ subGroups view=chain
+ shortLabel $o_Organism Chain
+ longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+ type chain tarSyr1
+
+ track chainNetTarSyr1Viewnet
+ shortLabel Net
+ view net
+ visibility full
+ subTrack chainNetTarSyr1
+
+ track netTarSyr1
+ subTrack chainNetTarSyr1Viewnet
+ subGroups view=net
+ shortLabel $o_Organism Net
+ longLabel $o_Organism ($o_date/$o_db) Alignment net
+ type netAlign tarSyr1 chainTarSyr1
+
track chainNetVenter
compositeTrack on
shortLabel Venter Chain/Net
longLabel J. Craig Venter Chain and Net Alignments
@@ -3074,17 +3170,65 @@
shortLabel $o_db Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign panTro1 chainPanTro1
-track chainNetGorGor1
+track chainNetGorGor2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
+priority 220.3
+color 0,0,0
+altColor 100,50,0
+type bed 3
+sortOrder view=+
+matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+matrixHeader A, C, G, T
+otherDb gorGor2
+chainMinScore 3000
+chainLinearGap medium
+html chainNet
+
+ track chainNetGorGor2Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetGorGor2
+ spectrum on
+
+ track chainGorGor2
+ subTrack chainNetGorGor2Viewchain
+ subGroups view=chain
+ shortLabel $o_Organism Chain
+ longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+ type chain gorGor2
+
+ track chainNetGorGor2Viewnet
+ shortLabel Net
+ view net
+ visibility full
+ subTrack chainNetGorGor2
+
+ track netGorGor2
+ subTrack chainNetGorGor2Viewnet
+ subGroups view=net
+ shortLabel $o_Organism Net
+ longLabel $o_Organism ($o_date/$o_db) Alignment net
+ type netAlign gorGor2 chainGorGor2
+
+track chainNetGorGor1
+compositeTrack on
+shortLabel $o_db Chain/Net
+longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+group compGeno
+noInherit on
priority 498
color 0,0,0
altColor 100,50,0
type bed 3
@@ -3266,8 +3410,56 @@
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign otoGar1 chainOtoGar1
+track chainNetCalJac3
+compositeTrack on
+shortLabel $o_db Chain/Net
+longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+group compGeno
+noInherit on
+priority 260.3
+color 0,0,0
+altColor 100,50,0
+type bed 3
+sortOrder view=+
+matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
+matrixHeader A, C, G, T
+otherDb calJac3
+chainMinScore 5000
+chainLinearGap medium
+html chainNet
+
+ track chainNetCalJac3Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetCalJac3
+ spectrum on
+
+ track chainCalJac3
+ subTrack chainNetCalJac3Viewchain
+ subGroups view=chain
+ shortLabel $o_Organism Chain
+ longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+ type chain calJac3
+
+ track chainNetCalJac3Viewnet
+ shortLabel Net
+ view net
+ visibility full
+ subTrack chainNetCalJac3
+
+ track netCalJac3
+ subTrack chainNetCalJac3Viewnet
+ subGroups view=net
+ shortLabel $o_Organism Net
+ longLabel $o_Organism ($o_date/$o_db) Alignment net
+ type netAlign calJac3 chainCalJac3
+
track chainNetCalJac1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
@@ -3314,8 +3506,56 @@
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign calJac1 chainCalJac1
+track chainNetPapHam1
+compositeTrack on
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+group compGeno
+noInherit on
+priority 240.3
+color 0,0,0
+altColor 100,50,0
+type bed 3
+sortOrder view=+
+matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
+matrixHeader A, C, G, T
+otherDb papHam1
+chainMinScore 5000
+chainLinearGap medium
+html chainNet
+
+ track chainNetPapHam1Viewchain
+ shortLabel Chain
+ view chain
+ visibility pack
+ subTrack chainNetPapHam1
+ spectrum on
+
+ track chainPapHam1
+ subTrack chainNetPapHam1Viewchain
+ subGroups view=chain
+ shortLabel $o_Organism Chain
+ longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+ type chain papHam1
+
+ track chainNetPapHam1Viewnet
+ shortLabel Net
+ view net
+ visibility full
+ subTrack chainNetPapHam1
+
+ track netPapHam1
+ subTrack chainNetPapHam1Viewnet
+ subGroups view=net
+ shortLabel $o_Organism Net
+ longLabel $o_Organism ($o_date/$o_db) Alignment net
+ type netAlign papHam1 chainPapHam1
+
track chainNetRheMac2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date/$o_db), Chain and Net Alignments