src/hg/hgTrackUi/hgTrackUi.c 1.515

1.515 2010/02/26 06:54:56 angie
Added option to (not) display item names in bam tracks. Also, when coloring by alignment qual and not pairing, sort by score.

Index: src/hg/hgTrackUi/hgTrackUi.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/hgTrackUi/hgTrackUi.c,v
retrieving revision 1.514
retrieving revision 1.515
diff -b -B -U 4 -r1.514 -r1.515
--- src/hg/hgTrackUi/hgTrackUi.c	22 Jan 2010 22:52:03 -0000	1.514
+++ src/hg/hgTrackUi/hgTrackUi.c	26 Feb 2010 06:54:56 -0000	1.515
@@ -2177,8 +2177,13 @@
 void bamUi(struct trackDb *tdb, struct customTrack *ct)
 /* BAM: short-read-oriented alignment file format. */
 {
 char cartVarName[1024];
+puts("<BR>");
+printf("<B>Display read names:</B>\n");
+char *tdbShowNames = trackDbSettingClosestToHome(tdb, BAM_SHOW_NAMES);
+safef(cartVarName, sizeof(cartVarName), "%s." BAM_SHOW_NAMES, tdb->tableName);
+cartMakeCheckBox(cart, cartVarName, !sameOk(tdbShowNames, "off"));
 boolean canPair = (trackDbSetting(tdb, BAM_PAIR_ENDS_BY_NAME) != NULL);
 puts("<BR>");
 if (canPair)
     {