src/utils/qa/findLevel.csh 1.21

Index: src/utils/qa/findLevel.csh
===================================================================
RCS file: src/utils/qa/findLevel.csh
diff -N src/utils/qa/findLevel.csh
--- src/utils/qa/findLevel.csh	4 Feb 2010 22:26:21 -0000	1.20
+++ /dev/null	1 Jan 1970 00:00:00 -0000
@@ -1,124 +0,0 @@
-#!/bin/tcsh
-source `which qaConfig.csh`
-
-################################
-#  
-#  09-26-2007
-#  Ann Zweig
-#
-#  find out which level in the trackDb directory
-#  a track is on, and which level the corresponding
-#  .html file is on.
-#
-################################
-
-set db=""
-set tableName=""
-set currDir=""
-set dbs=""
-
-if ( $#argv != 2 ) then
-  echo
-  echo " searches trackDb hierarchy for your table and corresponding .html file"
-  echo " also returns the value of the priority and visibility entries"
-  echo " and the .ra file location for each" 
-  echo
-  echo "    usage:  database tableName"
-  echo
-  exit
-else
-  set db=$argv[1]
-  set tableName=$argv[2]
-endif
-echo
-
-if ( "$HOST" != "hgwdev" ) then
- echo "\n error: you must run this script on dev!\n"
- exit 1
-endif
-
-# make sure this is a valid database name
-set dbs=`hgsql -e "SELECT name FROM dbDb" hgcentraltest | grep -w $db`
-if ( "$dbs" != $db ) then
-  echo
-  echo "   Invalid database name.  Try again."
-  echo
-  exit
-endif
-
-# check for trackDb dir at $USER root
-file ~/trackDb | grep -q 'symbolic link'
-if ( $status ) then
-  echo "\n  this program presumes you have a symlink to trackDb \
-    in your home dir\n"
-  exit
-else
-  # start at the assembly level
-  cd ~/trackDb/*/$db 
-  set currDir=`pwd`
-endif
-
-###########################################
-# find the level of the associated .html file
-# start at the assembly level
-cd ~/trackDb/*/$db
-set currDir=`pwd`
-
-if (-e $tableName.html) then
-  # the .html file is found at the assembly-level
-
-else
-  # the .html is not found at the assembly-level, go up to the organism level
-  cd ..
-  set currDir=`pwd`
-  if (-e $tableName.html) then
-    # the .html file is found at the organism-level
-
-  else
-    # the .html file is not found at the organism level, go up to the top level
-    cd ..
-    set currDir=`pwd`
-    if (-e $tableName.html) then
-      # the .html file is found at the top-level
-    else
-      # the .html file is not at the top level either - it does not exist
-      echo " * the $tableName.html file does not exist at any level"
-      set currDir=""
-    endif
-  endif
-endif
-if ($currDir != "") then
-  echo " * html file: \
-    `echo $currDir | sed 's^.*makeDb^~^'`/$tableName.html"
-endif
-echo
-
-
-###########################################
-# find the trackDb.ra entry (using tdbQuery)
-
-echo " * trackDb:"
-set all=`tdbQuery "select track,priority,visibility,release,filePos from $db" \
- | grep -w -A4 "track $tableName"`
-# print this output
-tdbQuery "select track,priority,visibility,release,filePos from $db" \
- | grep -w -A4 "track $tableName"
-
-set strict=`tdbQuery -strict "select track,priority,visibility,release,filePos from $db" \
- | grep -w -A4 "track $tableName"`
-set alpha=`tdbQuery -alpha "select track,priority,visibility,release,filePos from $db" \
- | grep -w -A4 "track $tableName"`
-
-if ( "$all" != "$strict" ) then
- # print strict
- tdbQuery -strict "select track,priority,visibility,release,filePos from $db" \
- | grep -w -A4 "track $tableName"
-endif
-
-if ( "$alpha" != "$all" && "$alpha" != "$strict" ) then
- # print alpha
- tdbQuery -alpha "select track,priority,visibility,release,filePos from $db" \
- | grep -w -A4 "track $tableName"
-endif
-
-exit 0