tdreszer: changes by commit

review to branch (2010-02-23 to 2010-03-02) v226

• Fixed a couple of metadata problems for HAIB TFBS
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.882 - lines changed: 6, context: html, text, full: html, text
• Fixed one more metadata problem for HAIB TFBS
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.883 - lines changed: 1, context: html, text, full: html, text
• Fixed a link
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDnaseSeq.html 1.14 - lines changed: 1, context: html, text, full: html, text
• Added a release note in preparation for release2
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.html 1.21 - lines changed: 20, context: html, text, full: html, text
• Updated HAIB TFSB data version in preparation for release2
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.885 - lines changed: 2, context: html, text, full: html, text
• Release 2 is just about ready for QA
  • src/hg/makeDb/doc/encodeDccHg18/haibTfsbRelease2Lists.txt 1.1 - lines changed: 1133, context: html, text, full: html, text
• Removed 2 duplicated and obsolete tracks from HAIB TFSB
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.886 - lines changed: 22, context: html, text, full: html, text
• Hopefully straightened out the GM12878/TAF mess for HAIN TFBS
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.887 - lines changed: 26, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.html 1.22 - lines changed: 8, context: html, text, full: html, text
• Straightened out the GM12878/Taf mess, I hope.
  • src/hg/makeDb/doc/encodeDccHg18/haibTfsbRelease2Lists.txt 1.2 - lines changed: 13, context: html, text, full: html, text
• Working through a lot of messy issues in order to get this ready for release 2
  • src/hg/makeDb/doc/encodeDccHg18/haibChipSeq.txt 1.7 - lines changed: 461, context: html, text, full: html, text
• Old stuff that needs to be checked in
  • src/hg/makeDb/doc/encodeDccHg18/uwStam.txt 1.8 - lines changed: 151, context: html, text, full: html, text
• Needed to include files.txt and md5sum.txt
  • src/hg/makeDb/doc/encodeDccHg18/uwDnaseSeq.release2.notes.txt 1.2 - lines changed: 2, context: html, text, full: html, text
• Fix a mislabeled replicate for HAIB TFBS. But there is more unscrambling to come
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.888 - lines changed: 5, context: html, text, full: html, text
• Straightened out mislabeled replicate.
  • src/hg/makeDb/doc/encodeDccHg18/haibTfsbRelease2Lists.txt 1.3 - lines changed: 6, context: html, text, full: html, text
• More ugly unscrambling. And it is not done yet.
  • src/hg/makeDb/doc/encodeDccHg18/haibTfsbRelease2Lists.txt 1.4 - lines changed: 1, context: html, text, full: html, text
• Getting ready to put Broad into the pushQ
  • src/hg/makeDb/doc/encodeDccHg18/broadChipSeqRelease3Lists.txt 1.1 - lines changed: 881, context: html, text, full: html, text
• Had to split UW DNase into alpha/beta
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.889 - lines changed: 1297, context: html, text, full: html, text
• Fixed glarring bug in ABC dimension settings persistence
  • src/hg/lib/hui.c 1.263 - lines changed: 1, context: html, text, full: html, text
• Split HAIB TFBS alpha/beta and added 2 tracks
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.890 - lines changed: 522, context: html, text, full: html, text
• Missed 2 alpha tags
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.892 - lines changed: 2, context: html, text, full: html, text
• Missed a bunch of alpha flags
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.893 - lines changed: 33, context: html, text, full: html, text
• Fixing Beta while flying blind
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.894 - lines changed: 1, context: html, text, full: html, text
• Still flying blind on beta. Thanks Katrina
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.895 - lines changed: 2, context: html, text, full: html, text
• Need to save this release 2 version while working on release 3
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadChipSeqRelease2.html 1.1 - lines changed: 137, context: html, text, full: html, text
• Need to save release 1 version while release 2 work is going on
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeqRelease1.html 1.1 - lines changed: 145, context: html, text, full: html, text
• Split Broad between alpha and beta
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.896 - lines changed: 1709, context: html, text, full: html, text
• back.gif needed to be a relative path
  • src/hg/encode/encodeDownloadsPage/encodeDownloadsPage.pl 1.28 - lines changed: 2, context: html, text, full: html, text
• Working on release 3
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadChipSeq.html 1.21 - lines changed: 24, context: html, text, full: html, text