src/hg/makeDb/doc/hg19.txt 1.85

Index: src/hg/makeDb/doc/hg19.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/hg19.txt,v
retrieving revision 1.84
retrieving revision 1.85
diff -b -B -U 4 -r1.84 -r1.85
--- src/hg/makeDb/doc/hg19.txt	18 Feb 2010 20:29:50 -0000	1.84
+++ src/hg/makeDb/doc/hg19.txt	19 Feb 2010 22:14:31 -0000	1.85
@@ -8222,8 +8222,10 @@
 # 2010-02-03 Received new data as the previous data had empty fields.
 # 2010-02-04 Loaded new data into hg19 database.
 # 2010-02-09 Received new data on 02/08/10 as there were more errors in the
 # code that caused the data to have empty fields.
+# 2010-02-19 Changed the posBasesHit column values to match those for hg18.
+# In hg18, they are all 1000, but this is meaningless. 
     mkdir /hive/data/genomes/hg19/bed/genomicSuperDups
     cd /hive/data/genomes/hg19/bed/genomicSuperDups
     # Remove old data
     rm *
@@ -8269,8 +8271,12 @@
 # columns are:  score, posBasesHit, testResult, verdict, chits, ccov
 # The descriptions of other columns should be changed for clarification:
 # otherSize -- equal to otherEnd minus otherStart
 # uid -- id shared by the query & subject of a hit 
+     # 2010-02-19 Changed the posBasesHit column to be 1000. Checked with 
+     # data provider about doing this so that the values are the same as for
+     # those in the hg18 table.
+     hgsql -e 'update genomicSuperDups set posBasesHit = 1000;' hg19
 
 ############################################################################
 # ADD LINK TO GENENETWORK (DONE. 12/02/09 Fan).