src/hg/makeDb/hgPar/parSpec.c 1.1

Index: src/hg/makeDb/hgPar/parSpec.c
===================================================================
RCS file: src/hg/makeDb/hgPar/parSpec.c
diff -N src/hg/makeDb/hgPar/parSpec.c
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ src/hg/makeDb/hgPar/parSpec.c	17 Feb 2010 08:54:21 -0000	1.1
@@ -0,0 +1,138 @@
+/* parSpec.c was originally generated by the autoSql program, which also 
+ * generated parSpec.h and parSpec.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "parSpec.h"
+
+static char const rcsid[] = "$Id$";
+
+struct parSpec *parSpecLoad(char **row)
+/* Load a parSpec from row fetched with select * from parSpec
+ * from database.  Dispose of this with parSpecFree(). */
+{
+struct parSpec *ret;
+
+AllocVar(ret);
+ret->name = cloneString(row[0]);
+ret->chromA = cloneString(row[1]);
+ret->startA = sqlSigned(row[2]);
+ret->endA = sqlSigned(row[3]);
+ret->chromB = cloneString(row[4]);
+ret->startB = sqlSigned(row[5]);
+ret->endB = sqlSigned(row[6]);
+return ret;
+}
+
+struct parSpec *parSpecLoadAll(char *fileName) 
+/* Load all parSpec from a whitespace-separated file.
+ * Dispose of this with parSpecFreeList(). */
+{
+struct parSpec *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[7];
+
+while (lineFileRow(lf, row))
+    {
+    el = parSpecLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct parSpec *parSpecLoadAllByChar(char *fileName, char chopper) 
+/* Load all parSpec from a chopper separated file.
+ * Dispose of this with parSpecFreeList(). */
+{
+struct parSpec *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[7];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = parSpecLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct parSpec *parSpecCommaIn(char **pS, struct parSpec *ret)
+/* Create a parSpec out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new parSpec */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->name = sqlStringComma(&s);
+ret->chromA = sqlStringComma(&s);
+ret->startA = sqlSignedComma(&s);
+ret->endA = sqlSignedComma(&s);
+ret->chromB = sqlStringComma(&s);
+ret->startB = sqlSignedComma(&s);
+ret->endB = sqlSignedComma(&s);
+*pS = s;
+return ret;
+}
+
+void parSpecFree(struct parSpec **pEl)
+/* Free a single dynamically allocated parSpec such as created
+ * with parSpecLoad(). */
+{
+struct parSpec *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->name);
+freeMem(el->chromA);
+freeMem(el->chromB);
+freez(pEl);
+}
+
+void parSpecFreeList(struct parSpec **pList)
+/* Free a list of dynamically allocated parSpec's */
+{
+struct parSpec *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    parSpecFree(&el);
+    }
+*pList = NULL;
+}
+
+void parSpecOutput(struct parSpec *el, FILE *f, char sep, char lastSep) 
+/* Print out parSpec.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->name);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->chromA);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%d", el->startA);
+fputc(sep,f);
+fprintf(f, "%d", el->endA);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->chromB);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%d", el->startB);
+fputc(sep,f);
+fprintf(f, "%d", el->endB);
+fputc(lastSep,f);
+}
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+