hartera: changes by commit

branch to review (2010-02-16 to 2010-02-23) v226

• Adding single subtracks to test views for Burge RNA-seq data track.
  • src/hg/makeDb/trackDb/human/trackDb.ra 1.516 - lines changed: 112, context: html, text, full: html, text
• Added subtracks and views for the Burge RNA-seq track.
  • src/hg/makeDb/trackDb/human/trackDb.ra 1.517 - lines changed: 167, context: html, text, full: html, text
• For Burge RNA-seq track, made all subtracks on by default and changed the upper view limit to be 1000.
  • src/hg/makeDb/trackDb/human/trackDb.ra 1.520 - lines changed: 32, context: html, text, full: html, text
• Added a Signal track for the Burge RNA-seq data. Updated trackDb entry for this track to include views.
  • src/hg/makeDb/doc/hg18.txt 1.399 - lines changed: 30, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg19.txt 1.84 - lines changed: 38, context: html, text, full: html, text
• Changed the colour for vegaGenes release beta to the same as for release alpha.
  • src/hg/makeDb/trackDb/zebrafish/trackDb.ra 1.76 - lines changed: 5, context: html, text, full: html, text
• Changed Vega Genes so that the genes and pseudogenes subtracks have different colours.
  • src/hg/makeDb/trackDb/zebrafish/trackDb.ra 1.77 - lines changed: 6, context: html, text, full: html, text
• Added more method details and information about track configuration.
  • src/hg/makeDb/trackDb/human/hg18/burgeRnaSeqGemMapperAlign.html 1.5 - lines changed: 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/burgeRnaSeqGemMapperAlign.html 1.5 - lines changed: 30, context: html, text, full: html, text
• Updated description based on that provided by the data providers.
  • src/hg/makeDb/trackDb/mouse/mm9/mapability.html 1.3 - lines changed: 25, context: html, text, full: html, text
• Older version of Mapability track description before CRG data added. This is for the release beta version.
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeMapabilityOld.html 1.1 - lines changed: 109, context: html, text, full: html, text
• Added release alpha/beta versions for the Mapability track. The beta version uses an older description html that omits description for the new CRG subtracks.
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.871 - lines changed: 225, context: html, text, full: html, text
• Removed duplicate subTrack line.
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.872 - lines changed: 1, context: html, text, full: html, text
• Changed value in genomicSuperDups table for segmental duplications track.
  • src/hg/makeDb/doc/hg19.txt 1.85 - lines changed: 6, context: html, text, full: html, text
• Removed duplicated subTrack lines from mapability track entry.
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.878 - lines changed: 2, context: html, text, full: html, text