hiram: changes by commit
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branch to review (2010-02-16 to 2010-02-23) v226
- cleaned up discussion and references, ready to go
- src/hg/makeDb/trackDb/marmoset/calJac3/description.html 1.2 - lines changed: 72, context: html, text, full: html, text
- cleaned up gap types to cover all included in this assembly
- src/hg/makeDb/trackDb/marmoset/calJac3/gap.html 1.2 - lines changed: 41, context: html, text, full: html, text
- working even if contig names are identical and ignoring extra columns on input
- src/hg/utils/automation/n50.pl 1.3 - lines changed: 13, context: html, text, full: html, text
- Correct text
- src/hg/makeDb/trackDb/marmoset/calJac3/gold.html 1.2 - lines changed: 9, context: html, text, full: html, text
- adding an elapsed time calculation when successful completion
- src/hg/utils/automation/doBlastzChainNet.pl 1.32 - lines changed: 11, context: html, text, full: html, text
- trying to lastz papHam1 ogoGar1 micMur1 and tarSyr1 with difficulty
- src/hg/makeDb/doc/calJac3.txt 1.4 - lines changed: 265, context: html, text, full: html, text
- initial assembly build and done with repeatMasker and simpleRepeats
- src/hg/makeDb/doc/gorGor2.txt 1.1 - lines changed: 110, context: html, text, full: html, text
- adding other gaps and ready for kluster scratch/data rsync
- src/hg/makeDb/doc/gorGor2.txt 1.2 - lines changed: 100, context: html, text, full: html, text
- Adding an 8-way conservation
- src/hg/makeDb/trackDb/marmoset/calJac3/trackDb.ra 1.2 - lines changed: 36, context: html, text, full: html, text
- adding gorilla gorGor2
- src/hg/makeDb/genbank/etc/genbank.conf 1.364 - lines changed: 19, context: html, text, full: html, text
- adding names for gorilla species
- src/hg/makeDb/genbank/src/lib/gbGenome.c 1.76 - lines changed: 2, context: html, text, full: html, text
- Added gorGor2 - Gorilla Gorilla
- src/hg/makeDb/genbank/etc/align.dbs 1.112 - lines changed: 1, context: html, text, full: html, text
- src/hg/makeDb/genbank/etc/hgwdev.dbs 1.116 - lines changed: 1, context: html, text, full: html, text
- done with genbank run
- src/hg/makeDb/doc/gorGor2.txt 1.3 - lines changed: 53, context: html, text, full: html, text
- some better defaults on initial track visibilities
- src/hg/makeDb/trackDb/tetraodon/tetNig2/trackDb.chainNet.ra 1.3 - lines changed: 8, context: html, text, full: html, text
- src/hg/makeDb/trackDb/tetraodon/tetNig2/trackDb.ra 1.5 - lines changed: 2, context: html, text, full: html, text
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